Evidence map›Paper›PMID 26379089›Full record

ArticleVirology2015

RNAP II processivity is a limiting step for HIV-1 transcription independent of orientation to and activity of endogenous neighboring promoters.

Katarzyna Kaczmarek Michaels, Frank Wolschendorf, Gillian M Schiralli Lester, Malini Natarajan, Olaf Kutsch, Andrew J Henderson

Open access · greenAbstract read
In one paragraph

Article in Virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Katarzyna Kaczmarek MichaelsDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA; Graduate Program in Molecular and Translational Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Frank WolschendorfDepartment of Medicine, Division of Infectious Diseases, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Gillian M Schiralli LesterUniversity of Rochester Medical Center, Department of Pediatrics, Division of Neonatology, Rochester, NY 14642, USA.
Malini NatarajanStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Olaf KutschDepartment of Medicine, Division of Infectious Diseases, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Andrew J HendersonDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA; Graduate Program in Molecular and Translational Medicine, Boston University School of Medicine, Boston, MA 02118, USA. Electronic address: andrew.henderson@bmc.org.
Boston University · USUniversity of Alabama at Birmingham · USStowers Institute for Medical Research · USUniversity of Rochester Medical Center · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
ROS Modulation of Innate and Adaptive Immunity in RAP30AR048311 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MOUNTZ, JOHN D · 2001 to 2017
$9.5M
Transcription mechanisms that contribute to HIV-1 latencyR01AI097117 · NIAID · BOSTON MEDICAL CENTER · PI HENDERSON, ANDREW J · 2013 to 2016
$1.7M
HTS for Synergistic Activators of Latent HIV-1 InfectionR01AI104499 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2013 to 2015
$1.6M
Regulation of HIV by T-Cell Signal TransductionR01AI062467 · NIAID · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI HENDERSON, ANDREW J · 2005 to 2009
$1.2M
Oral Macrophage Function in the Context of Periodontal Disease and HIV InfectionR56DE023950 · NIDCR · BOSTON MEDICAL CENTER · PI GIBSON, FRANK C, HENDERSON, ANDREW J · 2013 to 2014
$1.1M
Regulation of HIV Transcription ElongationR01AI077463 · NIAID · BOSTON MEDICAL CENTER · PI HENDERSON, ANDREW J · 2009 to 2010
$834k
Identification of Signals Required for the Establishment of HIV Infection and LatencyR56AI118682 · NIAID · BOSTON MEDICAL CENTER · PI HENDERSON, ANDREW J · 2015 to 2015
$761k
Kinomic analysis of host cell factors controlling latent HIV-1 infectionR21AI116188 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2014 to 2015
$551k
NIAID NIH HHS P30 AI027767NIAID NIH HHS P30AI027767NIAID NIH HHS R01 AI062467NIAID NIH HHS R01 AI077463NIAID NIH HHS R01 AI097117NIAID NIH HHS R01 AI104499NIAID NIH HHS R01-AI104499NIAID NIH HHS R21 AI116188NIAID NIH HHS R21-AI116188NIAID NIH HHS R56 AI118682NIAMS NIH HHS 5P30AR048311NIAMS NIH HHS P30 AR048311NIDCR NIH HHS R56 DE023950NIDCR NIH HHS R56-DE023950
6 · The paper itself

Abstract

Since HIV-1 has a propensity to integrate into actively expressed genes, transcriptional interference from neighboring host promoters has been proposed to contribute to the establishment and maintenance HIV-1 latency. To gain insights into how endogenous promoters influence HIV-1 transcription we utilized a set of inducible T cell lines and characterized whether there were correlations between expression of endogenous genes, provirus and long terminal repeat architecture. We show that neighboring promoters are active but have minimal impact on HIV-1 transcription, in particular, expression of the endogenous gene did not prevent expression of HIV-1 following induction of latent provirus. We also demonstrate that releasing paused RNAP II by diminishing negative elongation factor (NELF) is sufficient to reactivate transcriptionally repressed HIV-1 provirus regardless of the integration site and orientation of the provirus suggesting that NELF-mediated RNAP II pausing is a common mechanism of maintaining HIV-1 latency.

Indexed as

Promoter Regions, GeneticTranscription, GeneticGene Expression Regulation, ViralHIV-1HIV InfectionsHost-Pathogen InteractionsHumansRNA Polymerase IITranscription FactorsNSMF protein, humanRNA Polymerase IITranscription FactorsHIV latencyNELFRNA Polymerase II pausingTranscription interference

Identifiers

PMID26379089
PMCPMC4679410
OpenAlexW2130594147

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.