Evidence map›Paper›PMID 26378792›Full record

ArticlePloS one2015

Autophagosome Proteins LC3A, LC3B and LC3C Have Distinct Subcellular Distribution Kinetics and Expression in Cancer Cell Lines.

Michael I Koukourakis, Dimitra Kalamida, Alexandra Giatromanolaki, Christos E Zois, Efthimios Sivridis, Stamatia Pouliliou, Achilleas Mitrakas, Kevin C Gatter, Adrian L Harris

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 1 synthesis or guideline pooled it, 172 citations in OpenAlex.

  1. Guideline
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  20. Melatonin AttenuatesInternational journal of molecular sciences · 2024
    Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Michael I KoukourakisDepartment of Radiotherapy-Oncology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece.
Dimitra KalamidaDepartment of Radiotherapy-Oncology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece.
Alexandra GiatromanolakiDepartment of Pathology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece.
Christos E ZoisDepartment of Radiotherapy-Oncology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece; Cancer Research United Kingdom Molecular Oncology Laboratories, Weatherall Institute of Molecular Medicine, University of Oxford, Headington, Oxford, OX3 9DU, United Kingdom.
Efthimios SivridisDepartment of Pathology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece.
Stamatia PouliliouDepartment of Radiotherapy-Oncology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece.
Achilleas MitrakasDepartment of Radiotherapy-Oncology, Democritus University of Thrace Medical School, University General Hospital of Alexandroupolis, Alexandroupolis, Greece.
Kevin C GatterNuffield Department of Cellular Sciences, John Raddcliffe Hospital, Headington, Oxford, OX3 9DU, United Kingdom.
Adrian L HarrisCancer Research United Kingdom Molecular Oncology Laboratories, Weatherall Institute of Molecular Medicine, University of Oxford, Headington, Oxford, OX3 9DU, United Kingdom.
Democritus University of Thrace · GRUniversity of Oxford · GBJohn Radcliffe Hospital · GB

Funding

Cancer Research UK 11359Cancer Research UK 16466
6 · The paper itself

Abstract

LC3s (MAP1-LC3A, B and C) are structural proteins of autophagosomal membranes, widely used as biomarkers of autophagy. Whether these three LC3 proteins have a similar biological role in autophagy remains obscure. We examine in parallel the subcellular expression patterns of the three LC3 proteins in a panel of human cancer cell lines, as well as in normal MRC5 fibroblasts and HUVEC, using confocal microscopy and western blot analysis of cell fractions. In the cytoplasm, there was a minimal co-localization between LC3A, B and C staining, suggesting that the relevant autophagosomes are formed by only one out of the three LC3 proteins. LC3A showed a perinuclear and nuclear localization, while LC3B was equally distributed throughout the cytoplasm and localized in the nucleolar regions. LC3C was located in the cytoplasm and strongly in the nuclei (excluding nucleoli), where it extensively co-localized with the LC3A and the Beclin-1 autophagy initiating protein. Beclin 1 is known to contain a nuclear trafficking signal. Blocking nuclear export function by Leptomycin B resulted in nuclear accumulation of all LC3 and Beclin-1 proteins, while Ivermectin that blocks nuclear import showed reduction of accumulation, but not in all cell lines. Since endogenous LC3 proteins are used as major markers of autophagy in clinical studies and cell lines, it is essential to check the specificity of the antibodies used, as the kinetics of these molecules are not identical and may have distinct biological roles. The distinct subcellular expression patterns of LC3s provide a basis for further studies.

Indexed as

Active Transport, Cell NucleusAntibodiesApoptosis Regulatory ProteinsAutophagyBeclin-1Cell Line, TumorFatty Acids, UnsaturatedGene Expression RegulationHumansHuman Umbilical Vein Endothelial CellsIvermectinMacrolidesMembrane ProteinsMicrotubule-Associated ProteinsNeoplasmsRNA InterferenceAntibodiesApoptosis Regulatory Proteinsbafilomycin ABeclin-1BECN1 protein, humanFatty Acids, UnsaturatedIvermectinleptomycin BMacrolidesMAP1LC3A protein, humanMAP1LC3B protein, humanMAP1LC3C protein, humanMembrane ProteinsMicrotubule-Associated ProteinsRNA, Small Interfering

Identifiers

PMID26378792
PMCPMC4574774
OpenAlexW2300762239

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.