Evidence map›Paper›PMID 26378581›Full record

ArticleCancers2015

Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival.

Jing Shen, Abby B Siegel, Helen Remotti, Qiao Wang, Yueyue Shen, Regina M Santella

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

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  13. Linc00152 promotes proliferation in gastric cancer through the EGFR-dependent pathway.Journal of experimental & clinical cancer research : CR · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jing ShenDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University Medical Center, New York, NY 10032, USA. js2182@cumc.columbia.edu.
Abby B SiegelHerbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York,NY 10032, USA. aas54@cumc.columbia.edu.
Helen RemottiDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York,NY 10032, USA. her2007@cumc.columbia.edu.
Qiao WangDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University Medical Center, New York, NY 10032, USA. qw6@cumc.columbia.edu.
Yueyue ShenDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University Medical Center, New York, NY 10032, USA. Yueyue.Shen@uvm.edu.
Regina M SantellaDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University Medical Center, New York, NY 10032, USA. rps1@cumc.columbia.edu.
Columbia University Irving Medical Center · US

Funding

True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
BIOLOGICAL MONITORING FOR EXPOSURE TO AFLATOXINR01ES005116 · NIEHS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SANTELLA, REGINA M · 1990 to 2014
$5.2M
Aberrant DNA Methylation of MicroRNA Genes in Hepatocellular Carcinoma (HCC)R03CA156629 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHEN, JING · 2011 to 2012
$160k
NCI NIH HHS R03 CA156629NIEHS NIH HHS P30 ES009089NIEHS NIH HHS R01 ES005116
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) are larger than 200 nucleotides in length and pervasively expressed across the genome. An increasing number of studies indicate that lncRNA transcripts play integral regulatory roles in cellular growth, division, differentiation and apoptosis. Deregulated lncRNAs have been observed in a variety of human cancers, including hepatocellular carcinoma (HCC). We determined the expression profiles of 90 lncRNAs for 65 paired HCC tumor and adjacent non-tumor tissues, and 55 lncRNAs were expressed in over 90% of samples. Eight lncRNAs were significantly down-regulated in HCC tumor compared to non-tumor tissues (p < 0.05), but no lncRNA achieved statistical significance after Bonferroni correction for multiple comparisons. Within tumor tissues, carrying more aberrant lncRNAs (6-7) was associated with a borderline significant reduction Cancers 2015, 7 1848 in survival (HR = 8.5, 95% CI: 1.0-72.5). The predictive accuracy depicted by the AUC was 0.93 for HCC survival when using seven deregulated lncRNAs (likelihood ratio test p = 0.001), which was similar to that combining the seven lncRNAs with tumor size and treatment (AUC = 0.96, sensitivity = 87%, specificity = 87%). These data suggest the potential association of deregulated lncRNAs with hepatocarcinogenesis and HCC survival.

Indexed as

deregulationHBVHCClong non-coding RNAssurvival

Identifiers

PMID26378581
PMCPMC4586798
OpenAlexW1916379360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.