Evidence map›Paper›PMID 26378446›Full record

ArticlePloS one2015

Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.

Adam J Foster, Gervais Pelletier, Philippe Tanguay, Armand Séguin

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Exploring the infection strategy ofFrontiers in plant science · 2025
    Article
  3. Article
  4. Identification of Kunitz-Type Inhibitor Gene Family ofInternational journal of molecular sciences · 2024
    Article
  5. Review
  6. Cell wall response of field grownFrontiers in plant science · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2020
    Article
  12. 101Studies in mycology · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. PeerJ · 2017
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Adam J FosterCanadian Forest Service, Natural Resources Canada, Laurentian Forestry Centre, Québec, Canada.
Gervais PelletierCanadian Forest Service, Natural Resources Canada, Laurentian Forestry Centre, Québec, Canada.
Philippe TanguayCanadian Forest Service, Natural Resources Canada, Laurentian Forestry Centre, Québec, Canada.
Armand SéguinCanadian Forest Service, Natural Resources Canada, Laurentian Forestry Centre, Québec, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diseases of poplar caused by the native fungal pathogen Sphaerulina musiva and related species are of growing concern, particularly with the increasing interest in intensive poplar plantations to meet growing energy demands. Sphaerulina musiva is able to cause infection on leaves, resulting in defoliation and canker formation on stems. To gain a greater understanding of the different responses of poplar species to infection caused by the naturally co-evolved Sphaerulina species, RNA-seq was conducted on leaves of Populus deltoides, P. balsamifera and P. tremuloides infected with S. musiva, S. populicola and a new undescribed species, Ston1, respectively. The experiment was designed to contain the pathogen in a laboratory environment, while replicating disease development in commercial plantations. Following inoculation, trees were monitored for disease symptoms, pathogen growth and host responses. Genes involved in phenylpropanoid, terpenoid and flavonoid biosynthesis were generally upregulated in P. balsamifera and P. tremuloides, while cell wall modification appears to play an important role in the defense of P. deltoides. Poplar defensive genes were expressed early in P. balsamifera and P. tremuloides, but their expression was delayed in P. deltoides, which correlated with the rate of disease symptoms development. Also, severe infection in P. balsamifera led to leaf abscission. This data gives an insight into the large differences in timing and expression of genes between poplar species being attacked by their associated Sphaerulina pathogen.

Indexed as

AscomycotaBase SequenceDNA, FungalFlavonoidsGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantPlant DiseasesPlant LeavesPopulusRNA, PlantSequence Analysis, RNATerpenesTreesDNA, FungalFlavonoidsRNA, PlantTerpenes

Identifiers

PMID26378446
PMCPMC4575021

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.