Evidence map›Paper›PMID 26378254›Full record

ArticleMolecular biology of the cell2015

Conserved function of the lysine-based KXD/E motif in Golgi retention for endomembrane proteins among different organisms.

Cheuk Hang Woo, Caiji Gao, Ping Yu, Linna Tu, Zhaoyue Meng, David K Banfield, Xiaoqiang Yao, Liwen Jiang

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. An Overview of Protein Secretion in Plant Cells.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Role of theFrontiers in cell and developmental biology · 2022
    Review
  12. Normal oil body formation inFrontiers in plant science · 2022
    Article
  13. Article
  14. Article
  15. Conserved C-terminal motifs in odorant receptors instruct their cell surface expression and cAMP signaling.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  16. Article
  17. Article
  18. Loss ofFrontiers in plant science · 2020
    Article
  19. Separating Golgi Proteins fromThe Plant cell · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Cheuk Hang WooCentre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, School of Life Sciences, and.
Caiji GaoCentre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, School of Life Sciences, and.
Ping YuDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Linna TuDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Zhaoyue MengSchool of Biomedical Sciences, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China.
David K BanfieldDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Xiaoqiang YaoSchool of Biomedical Sciences, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China CUHK Shenzhen Research Institute, Chinese University of Hong Kong, Shenzhen 518057, China.
Liwen JiangCentre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, School of Life Sciences, and CUHK Shenzhen Research Institute, Chinese University of Hong Kong, Shenzhen 518057, China ljiang@cuhk.edu.hk).
Hong Kong University of Science and Technology · HKAgrobiotechnology Institute · ESChinese University of Hong Kong · HKChinese University of Hong Kong, Shenzhen · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We recently identified a new COPI-interacting KXD/E motif in the C-terminal cytosolic tail (CT) of Arabidopsis endomembrane protein 12 (AtEMP12) as being a crucial Golgi retention mechanism for AtEMP12. This KXD/E motif is conserved in CTs of all EMPs found in plants, yeast, and humans and is also present in hundreds of other membrane proteins. Here, by cloning selective EMP isoforms from plants, yeast, and mammals, we study the localizations of EMPs in different expression systems, since there are contradictory reports on the localizations of EMPs. We show that the N-terminal and C-terminal GFP-tagged EMP fusions are localized to Golgi and post-Golgi compartments, respectively, in plant, yeast, and mammalian cells. In vitro pull-down assay further proves the interaction of the KXD/E motif with COPI coatomer in yeast. COPI loss of function in yeast and plants causes mislocalization of EMPs or KXD/E motif-containing proteins to vacuole. Ultrastructural studies further show that RNA interference (RNAi) knockdown of coatomer expression in transgenic Arabidopsis plants causes severe morphological changes in the Golgi. Taken together, our results demonstrate that N-terminal GFP fusions reflect the real localization of EMPs, and KXD/E is a conserved motif in COPI interaction and Golgi retention in eukaryotes.

Indexed as

Amino Acid MotifsAmino Acid SequenceArabidopsisArabidopsis ProteinsConserved SequenceCOP-Coated VesiclesGolgi ApparatusHEK293 CellsHumansIntracellular SpaceLysineMembrane ProteinsPlants, Genetically ModifiedStructure-Activity RelationshipUbiquitin-Protein LigasesArabidopsis ProteinsAT2G32950 protein, ArabidopsisLysineMembrane ProteinsUbiquitin-Protein Ligases

Identifiers

PMID26378254
PMCPMC4642860
OpenAlexW2203426711

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.