Evidence map›Paper›PMID 26378233›Full record

ArticleThe Journal of biological chemistry2015

Formation of a Ternary Complex for Selenocysteine Biosynthesis in Bacteria.

Ivan R Silva, Vitor H B Serrão, Livia R Manzine, Lívia M Faim, Marco T A da Silva, Raphaela Makki, Daniel M Saidemberg, Marinônio L Cornélio, Mário S Palma, Otavio H Thiemann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Bioinformatic Prediction of an tRNAInternational journal of molecular sciences · 2021
    Article
  4. Article
  5. Why Selenocysteine Is Unique?Frontiers in molecular biosciences · 2020
    Article
  6. [A facile method for producing selenocysteine-containing proteins].Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2018
    Article
  7. A Facile Method for Producing Selenocysteine-Containing Proteins.Angewandte Chemie (International ed. in English) · 2018
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ivan R SilvaFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP.
Vitor H B SerrãoFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP, the Physics Department, Federal University of Sao Carlos - UFSCar, 13565-905 Sao Carlos, SP, Brazil.
Livia R ManzineFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP.
Lívia M FaimFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP.
Marco T A da SilvaFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP.
Raphaela MakkiFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP.
Daniel M Saidembergthe Department of Biology/CEIS, Biosciences Institute of Rio Claro, Sao Paulo State University - UNESP, 13506-900 Rio Claro, SP, and.
Marinônio L Cornéliothe Physics Department, Institute of Biosciences, Letters and Exact Sciences (IBILCE), Sao Paulo State University - UNESP, 15054-000 Sao Jose do Rio Preto, SP, Brazil.
Mário S Palmathe Department of Biology/CEIS, Biosciences Institute of Rio Claro, Sao Paulo State University - UNESP, 13506-900 Rio Claro, SP, and.
Otavio H ThiemannFrom the Physics and Informatics Department, Physics Institute of Sao Carlos, University of Sao Paulo - USP, CEP 13563-120 Sao Carlos, SP, thiemann@ifsc.usp.br.
Universidade de São Paulo · BRUniversidade Estadual Paulista (Unesp) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The synthesis of selenocysteine-containing proteins (selenoproteins) involves the interaction of selenocysteine synthase (SelA), tRNA (tRNA(Sec)), selenophosphate synthetase (SelD, SPS), a specific elongation factor (SelB), and a specific mRNA sequence known as selenocysteine insertion sequence (SECIS). Because selenium compounds are highly toxic in the cellular environment, the association of selenium with proteins throughout its metabolism is essential for cell survival. In this study, we demonstrate the interaction of SPS with the SelA-tRNA(Sec) complex, resulting in a 1.3-MDa ternary complex of 27.0 ± 0.5 nm in diameter and 4.02 ± 0.05 nm in height. To assemble the ternary complex, SPS undergoes a conformational change. We demonstrated that the glycine-rich N-terminal region of SPS is crucial for the SelA-tRNA(Sec)-SPS interaction and selenoprotein biosynthesis, as revealed by functional complementation experiments. Taken together, our results provide new insights into selenoprotein biosynthesis, demonstrating for the first time the formation of the functional ternary SelA-tRNA(Sec)-SPS complex. We propose that this complex is necessary for proper selenocysteine synthesis and may be involved in avoiding the cellular toxicity of selenium compounds.

Indexed as

Amino Acid SequenceAnisotropyBase SequenceCloning, MolecularEscherichia coliEscherichia coli ProteinsGenetic Complementation TestMicroscopy, Atomic ForceModels, MolecularMolecular Sequence DataMutationPhosphotransferasesProtein BindingProtein ConformationRNA, Transfer, Amino Acid-SpecificSelenocysteineEscherichia coli ProteinsPhosphotransferasesRNA, Transfer, Amino Acid-Specificselenium transferaseSelenocysteineselenophosphate synthetaseTransferasestRNA, selenocysteine-bacteriaprotein complexRNA-protein interactionselenocysteinetransfer RNA (tRNA)

Identifiers

PMID26378233
PMCPMC4705924
OpenAlexW2182228627

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.