Evidence map›Paper›PMID 26378020›Full record

ArticleOncotarget2015

Expression profile of innate immune receptors, NLRs and AIM2, in human colorectal cancer: correlation with cancer stages and inflammasome components.

Rongrong Liu, Agnieszka D Truax, Liang Chen, Peizhen Hu, Zengshan Li, Jun Chen, Chaojun Song, Lihua Chen, Jenny Pan-Yun Ting

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. The role of NLRP3 inflammasome in 5-fluorouracil resistance of oral squamous cell carcinoma.Journal of experimental & clinical cancer research : CR · 2017
    Trial
  3. Article
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  10. Harnessing innate immune pathways for therapeutic advancement in cancer.Signal transduction and targeted therapy · 2024
    Review
  11. Article
  12. Review
  13. Review
  14. The NLR gene family: from discovery to present day.Nature reviews. Immunology · 2023
    Review
  15. Review
  16. Review
  17. Review
  18. Inflammasome signaling in colorectal cancer.Translational research : the journal of laboratory and clinical medicine · 2023
    Review
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Rongrong LiuDepartment of Immunology, School of Basic Medicine, Fourth Military Medical University, Xi'an, China.
Agnieszka D TruaxThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Liang ChenThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Peizhen HuDepartment of Pathology, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Zengshan LiDepartment of Pathology, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Jun ChenDepartment of Encephalopathy, Traditional Chinese Medicine Hospital of Shan Xi Province, Xi'an, China.
Chaojun SongDepartment of Immunology, School of Basic Medicine, Fourth Military Medical University, Xi'an, China.
Lihua ChenDepartment of Immunology, School of Basic Medicine, Fourth Military Medical University, Xi'an, China.
Jenny Pan-Yun TingThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
University of North Carolina at Chapel Hill · USAir Force Medical University · CNXijing Hospital · CNShanxi Province Hospital of Traditional Chinese Medicine · CN

Funding

Role of IL-10 in APC Regulation of Protective vs. Pathogenic T Cell Responses toP01DK094779 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHEIKH, SHEHZAD Z. · 2013 to 2023
$17.9M
GASTROENTEROLOGY RESEARCH TRAININGT32DK007737 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHEHZAD Z. SHEIKH · 1996 to 2026
$7.8M
Colitis, Colon Cancer and the NLR FamilyR01CA156330 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TING, JENNY P · 2011 to 2019
$3.0M
Interaction of Retinoid X Receptors and NOD-Like Receptors in Colon InflammationF32DK098916 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TRUAX, AGNIESZKA DOROTA · 2013 to 2015
$132k
NCI NIH HHS CA156330NCI NIH HHS R01 CA156330NIDDK NIH HHS DK094779NIDDK NIH HHS F32 DK098916NIDDK NIH HHS F32-DK098916NIDDK NIH HHS P01 DK094779NIDDK NIH HHS T32 DK007737NIDDK NIH HHS T32-DK007737
6 · The paper itself

Abstract

NLRs (nucleotide-binding domain leucine-rich repeat proteins or NOD-like receptors) are regulators of inflammation and immunity. A subgroup of NLRs and the innate immune receptor, AIM2 (absent-in-melanoma 2), can induce the assembly of a large caspase-1 activating complex called the inflammasome. Other NLRs regulate key signaling pathways such as NF-kB and MAPK. Since inflammation is a central component of colorectal cancer (CRC), this work was undertaken to analyze NLR and AIM2 expression in human CRC by combining bioinformatics analysis and experimental verification using clinical tissue samples. Additional experiments analyzed the association of (i) gene expression and cancer staging, and (ii) gene expression among inflammasome components.Ten public CRC datasets from the Oncomine® Platform were analyzed. Genes analyzed include NLRP1, NLRP3, NLRP6, NLRP12, NLRC3, NLRC4, NLRC5, NOD1, NOD2 and AIM2. Additionally, forty case-matched cancer samples and adjacent healthy control tissues isolated from a cohort of Chinese CRC patients were profiled.Three patterns of gene expression in CRC are shown. The expression of NLRC3, a checkpoint of inflammation, and the inflammasome components NLRP1, NLRP3, NLRC4 and AIM2 were reduced in CRC. NOD1 and NOD2 expression was increased in CRC, while NLRC5, NLRP6 and NLRP12 showed little difference compared to controls. Reduced expression of NLRC3 in CRC was verified in all available databases analyzed and confirmed with our patient cohort. Furthermore, the extent of NLRC3 and AIM2 gene reduction was correlated with cancer progression. This report reveals the potential value of NLR and AIM2 genes as biomarkers of CRC and cancer progression.

Indexed as

Cohort StudiesColorectal NeoplasmsDNA-Binding ProteinsHumansImmunity, InnateInflammasomesIntercellular Signaling Peptides and ProteinsNeoplasm StagingNod1 Signaling Adaptor ProteinSignal TransductionAIM2 protein, humanDNA-Binding ProteinsInflammasomesIntercellular Signaling Peptides and ProteinsNLRC3 protein, humanNod1 Signaling Adaptor ProteinAIM2colorectal cancerFFPEinflammasomeNLRs

Identifiers

PMID26378020
PMCPMC4741778
OpenAlexW2219295994

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.