Evidence map›Paper›PMID 26377693›Full record

ArticleArchives of toxicology2016

Comparative transcriptomic analyses to scrutinize the assumption that genotoxic PAHs exert effects via a common mode of action.

S Labib, A Williams, C H Guo, K Leingartner, V M Arlt, H H Schmeiser, C L Yauk, P A White, S Halappanavar

Open access · hybridAbstract read
In one paragraph

Article in Archives of toxicology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Classifying polycyclic aromatic hydrocarbons by carcinogenic potency using in vitro biosignatures.Toxicology in vitro : an international journal published in association with BIBRA · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Cytochrome bArchives of toxicology · 2018
    Article
  14. Article
  15. Transcriptomics in toxicology.Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

S LabibEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
A WilliamsEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
C H GuoEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
K LeingartnerEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
V M ArltAnalytical and Environmental Sciences Division, MRC-PHE Centre for Environment and Health, King's College London, London, SE1 9NH, UK.
H H SchmeiserDivision of Radiopharmaceutical Chemistry, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany.
C L YaukEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
P A WhiteEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
S HalappanavarEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada. Sabina.halappanavar@hc-sc.gc.ca.
Health Canada · CAGerman Cancer Research Center · DEKing's College London · GB

Funding

Cancer Research UK 14329
6 · The paper itself

Abstract

In this study, the accuracy of the assumption that genotoxic, carcinogenic polycyclic aromatic hydrocarbons (PAHs) act via similar mechanisms of action as benzo(a)pyrene (BaP), the reference PAH used in the human health risk assessment of PAH-containing complex mixtures, was investigated. Adult male Muta™Mouse were gavaged for 28 days with seven individual, genotoxic PAHs. Global gene expression profiles in forestomach, liver, and lung (target tissues of exposure) were determined at 3 days post-exposure. The results are compared with our previously published results from mice exposed to BaP via the same exposure regimen. Although all PAHs showed enhanced ethoxyresorufin-O-deethylase activity, DNA adduct formation, and lacZ mutant frequency in the lungs, the unsupervised cluster analysis of differentially expressed genes revealed that the transcriptional changes are both PAH- and tissue-specific, with lung showing the most response. Further bioinformatics-/pathway-based analysis revealed that all PAHs induce expression of genes associated with carcinogenic processes, including DNA damage response, immune/inflammatory response, or cell signaling processes; however, the type of pathways and the magnitude of change varied for each PAH and were not the same as those observed for BaP. Benchmark dose modeling showed transcriptomic data closely reflected the known tumor incidence for the individual PAHs in each tissue. Collectively, the results suggest that the underlying mechanisms of PAH-induced toxicity leading to tumorigenesis are tissue-specific and not the same for all PAHs; based on the tissue type considered, use of BaP as a reference chemical may overestimate or underestimate the carcinogenic potential of PAHs.

Indexed as

AnimalsBenzo(a)pyreneCarcinogens, EnvironmentalCluster AnalysisDNA AdductsGastric MucosaLac OperonLiverLungMaleMice, TransgenicMutagensPolycyclic Aromatic HydrocarbonsStomachToxicogeneticsTranscriptomeBenzo(a)pyreneCarcinogens, EnvironmentalDNA AdductsMutagensPolycyclic Aromatic Hydrocarbonspolycyclic aromatic hydrocarbons-DNA adductBenzo(a)pyreneComplex mixturesMode of actionPolycyclic aromatic hydrocarbonsToxicogenomics

Identifiers

PMID26377693
PMCPMC5043007
OpenAlexW1935129283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.