Evidence map›Paper›PMID 26375388›Full record

ArticlePloS one2015

Biochemical Characterization and Validation of a Catalytic Site of a Highly Thermostable Ts2631 Endolysin from the Thermus scotoductus Phage vB_Tsc2631.

Magdalena Plotka, Anna-Karina Kaczorowska, Agnieszka Morzywolek, Joanna Makowska, Lukasz P Kozlowski, Audur Thorisdottir, Sigurlaug Skírnisdottir, Sigridur Hjörleifsdottir, Olafur H Fridjonsson, Gudmundur O Hreggvidsson and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Recent Advances in Endolysin Engineering.Antibiotics (Basel, Switzerland) · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Viruses · 2023
    Article
  17. Article
  18. Article
  19. Molecular Characterization of a DNA Polymerase fromInternational journal of molecular sciences · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 3 countries.

Magdalena PlotkaDepartment of Microbiology, University of Gdansk, Gdansk, Poland.
Anna-Karina KaczorowskaCollection of Plasmids and Microorganisms, University of Gdansk, Gdansk, Poland.
Agnieszka MorzywolekDepartment of Microbiology, University of Gdansk, Gdansk, Poland.
Joanna MakowskaFaculty of Chemistry, University of Gdansk, Gdansk, Poland.
Lukasz P KozlowskiLaboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Warsaw, Poland.
Audur ThorisdottirVESO Vikan, Namsos, Norway.
Sigurlaug SkírnisdottirMatis, Reykjavik, Iceland.
Sigridur HjörleifsdottirORF genetics, Kopavogur, Iceland.
Olafur H FridjonssonMatis, Reykjavik, Iceland.
Gudmundur O HreggvidssonMatis, Reykjavik, Iceland; Faculty of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland.
Jakob K KristjanssonProkazyme ehf, Reykjavik, Iceland.
Slawomir DabrowskiA&A Biotechnology, Gdynia, Poland.
Janusz M BujnickiLaboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Warsaw, Poland; Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland.
Tadeusz KaczorowskiDepartment of Microbiology, University of Gdansk, Gdansk, Poland.
University of Gdańsk · PLMatís (Iceland) · ISA&A Biotechnology (Poland) · PLAdam Mickiewicz University in Poznań · PLIcelandic Heart Association · ISInternational Institute of Molecular and Cell Biology · PLNorwegian Veterinary Centre for Contract Research and Commercial Services · NOProkazyme (Iceland) · ISUniversity of Iceland · IS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phage vB_Tsc2631 infects the extremophilic bacterium Thermus scotoductus MAT2631 and uses the Ts2631 endolysin for the release of its progeny. The Ts2631 endolysin is the first endolysin from thermophilic bacteriophage with an experimentally validated catalytic site. In silico analysis and computational modelling of the Ts2631 endolysin structure revealed a conserved Zn2+ binding site (His30, Tyr58, His131 and Cys139) similar to Zn2+ binding site of eukaryotic peptidoglycan recognition proteins (PGRPs). We have shown that the Ts2631 endolysin lytic activity is dependent on divalent metal ions (Zn2+ and Ca2+). The Ts2631 endolysin substitution variants H30N, Y58F, H131N and C139S dramatically lost their antimicrobial activity, providing evidence for the role of the aforementioned residues in the lytic activity of the enzyme. The enzyme has proven to be not only thermoresistant, retaining 64.8% of its initial activity after 2 h at 95°C, but also highly thermodynamically stable (Tm = 99.82°C, ΔHcal = 4.58 × 10(4) cal mol(-1)). Substitutions of histidine residues (H30N and H131N) and a cysteine residue (C139S) resulted in variants aggregating at temperatures ≥75°C, indicating a significant role of these residues in enzyme thermostability. The substrate spectrum of the Ts2631 endolysin included extremophiles of the genus Thermus but also Gram-negative mesophiles, such as Escherichia coli, Salmonella panama, Pseudomonas fluorescens and Serratia marcescens. The broad substrate spectrum and high thermostability of this endolysin makes it a good candidate for use as an antimicrobial agent to combat Gram-negative pathogens.

Indexed as

Catalytic DomainAmino Acid SequenceBacteriophagesCations, DivalentEndopeptidasesEnzyme StabilityModels, MolecularMolecular Sequence DataSodium ChlorideSubstrate SpecificityTemperatureThermusCations, DivalentendolysinEndopeptidasesSodium Chloride

Identifiers

PMID26375388
PMCPMC4573324
OpenAlexW1472491453

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.