Evidence map›Paper›PMID 26375201›Full record

ArticleArchives of biochemistry and biophysics2015

Contribution to catalysis of ornithine binding residues in ornithine N5-monooxygenase.

Reeder Robinson, Insaf A Qureshi, Catherine A Klancher, Pedro J Rodriguez, John J Tanner, Pablo Sobrado

Open access · bronzeAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Biochemistry and biophysics reports · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Trapping conformational states of a flavin-dependentThe Journal of biological chemistry · 2020
    Article
  6. Review
  7. Article
  8. Flavin oxidation in flavin-dependent N-monooxygenases.Protein science : a publication of the Protein Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Reeder RobinsonDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.
Insaf A QureshiDepartment of Biotechnology and Bioinformatics, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India.
Catherine A KlancherDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.
Pedro J RodriguezDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.
John J TannerDepartments of Biochemistry and Chemistry, University of Missouri-Columbia, Columbia, MO 65211, USA. Electronic address: tannerjj@missouri.edu.
Pablo SobradoDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA. Electronic address: psobrado@vt.edu.
Virginia Tech · USUniversity of Hyderabad · INUniversity of Missouri · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Mechanistic and structural studies of eukaryotic UDP-galactopyranose mutasesR01GM094469 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SOBRADO, PABLO, TANNER, JOHN J · 2010 to 2019
$2.0M
NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM094469
6 · The paper itself

Abstract

The SidA ornithine N5-monooxygenase from Aspergillus fumigatus is a flavin monooxygenase that catalyzes the NADPH-dependent hydroxylation of ornithine. Herein we report a mutagenesis study targeting four residues that contact ornithine in crystal structures of SidA: Lys107, Asn293, Asn323, and Ser469. Mutation of Lys107 to Ala abolishes activity as measured in steady-state oxygen consumption and ornithine hydroxylation assays, indicating that the ionic interaction of Lys107 with the carboxylate of ornithine is essential for catalysis. Mutation of Asn293, Asn323, or Ser469 individually to Ala results in >14-fold increases in Km values for ornithine. Asn323 to Ala also increases the rate constant for flavin reduction by NADPH by 18-fold. Asn323 is unique among the four ornithine binding residues in that it also interacts with NADPH by forming a hydrogen bond with the nicotinamide ribose. The crystal structure of N323A complexed with NADP(+) and ornithine shows that the nicontinamide riboside group of NADP is disordered. This result suggests that the increase in flavin reduction rate results from an increase in conformational space available to the enzyme-bound NADP(H). Asn323 thus facilitates ornithine binding at the expense of hindering flavin reduction, which demonstrates the delicate balance that exists within protein-ligand interaction networks in enzyme active sites.

Indexed as

Aspergillus fumigatusBiocatalysisCrystallography, X-RayEscherichia coliFlavinsFungal ProteinsGene ExpressionHydrogen BondingHydroxylationKineticsMixed Function OxygenasesModels, MolecularMutagenesis, Site-DirectedNADPOrnithineOxidation-ReductionFlavinsFungal ProteinsMixed Function OxygenasesNADPOrnithineornithine N5-oxygenaseRecombinant ProteinsFlavin-dependent monooxygneasesHydroperoxyflavinOrnithine hydroxylaseSiderophore

Identifiers

PMID26375201
PMCPMC6467063
OpenAlexW1433798074

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.