Evidence map›Paper›PMID 26375006›Full record

ArticleNature2015

BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis.

Matthew C Canver, Elenoe C Smith, Falak Sher, Luca Pinello, Neville E Sanjana, Ophir Shalem, Diane D Chen, Patrick G Schupp, Divya S Vinjamur, Sara P Garcia and 9 more

Abstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 547 papers.

0numbers the graph read from it
0cells of the map it votes in
547citing papers in PubMed
43.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

547 citing papers in PubMed, 897 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Synthetic Regulatory Genomics.Annual review of genomics and human genetics · 2026
    Review
  11. Genetic influences on haematopoiesis.Nature reviews. Genetics · 2026
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  12. Article
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  14. Review
  15. New Gene Therapy Strategy for β-Thalassemia.Stem cell reviews and reports · 2026
    Review
  16. Review
  17. AI platform for CRISPR functional mapping and function-based drug design.bioRxiv : the preprint server for biology · 2026
    Article
  18. Article
  19. Review
  20. Review

487 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 2 countries.

Matthew C CanverDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Elenoe C SmithDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Falak SherDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Luca PinelloDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, Massachusetts 02115, USA.
Neville E SanjanaBroad Institute of MIT and Harvard, McGovern Institute for Brain Research, Department of Brain and Cognitive Sciences and Department of Biological Engineering, MIT, Cambridge, Massachusetts 02142, USA.
Ophir ShalemBroad Institute of MIT and Harvard, McGovern Institute for Brain Research, Department of Brain and Cognitive Sciences and Department of Biological Engineering, MIT, Cambridge, Massachusetts 02142, USA.
Diane D ChenDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Patrick G SchuppDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Divya S VinjamurDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Sara P GarciaDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, Massachusetts 02115, USA.
Sidinh LucDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Ryo KuritaCell Engineering Division, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan.
Yukio NakamuraCell Engineering Division, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan.
Yuko FujiwaraDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Takahiro MaedaDivision of Hematology, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Guo-Cheng YuanDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, Massachusetts 02115, USA.
Feng ZhangBroad Institute of MIT and Harvard, McGovern Institute for Brain Research, Department of Brain and Cognitive Sciences and Department of Biological Engineering, MIT, Cambridge, Massachusetts 02142, USA.
Stuart H OrkinDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Daniel E BauerDivision of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Dana-Farber Cancer Institute · USHarvard University · USHarvard Stem Cell Institute · USRIKEN BioResource Research Center · JPBoston Children's Hospital · USBrigham and Women's Hospital · USHoward Hughes Medical Institute · US

Funding

TRANSCRIPTION FACTOR GATA-1 IN TERMINAL ERYTHROID DEVELOPMENTP01HL032262 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI BAUER, DANIEL EVAN · 1985 to 2021
$38.9M
CORE--ZEBRAFISHP30DK049216 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1999 to 2015
$14.3M
Isogenic Human Pluripotent Stem Cell-Based Models of Human Disease MutationsR01DK097768 · NIDDK · BROAD INSTITUTE, INC. · PI COWAN, CHAD ALBERT, ZHANG, FENG · 2012 to 2016
$11.0M
MOLECULAR ANALYSIS OF NORMAL AND TYHALASSEMIC DNAR01HL032259 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1985 to 2022
$8.8M
Massively-parallel functional interrogation of psychiatric geneticsR01MH110049 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2015 to 2019
$5.5M
Probing Neuropsychiatric Diseases Using Targeted Epigenome and Genome EngineeringDP1MH100706 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2012 to 2016
$4.3M
Systems Biology Analysis of Human ErythropoiesisR01HL119099 · NHLBI · DANA-FARBER CANCER INST · PI ORKIN, STUART H, YUAN, GUO-CHENG · 2014 to 2018
$3.4M
Toward a systematic understanding of targeting mechanisms for epigenetic factorsR01HG005085 · NHGRI · DANA-FARBER CANCER INST · PI YUAN, GUO-CHENG · 2011 to 2014
$1.7M
Epigenetic regulation of BCL11A in the hemoglobin switchK08DK093705 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI BAUER, DANIEL EVAN · 2012 to 2016
$679k
Discovering disease-causal variants by linking genetic and epigenetic variationK99HG008399 · NHGRI · DANA-FARBER CANCER INST · PI PINELLO, LUCA · 2015 to 2016
$146k
Identification of Novel Regulators of Fetal Hemoglobin ExpressionF30DK103359 · NIDDK · HARVARD MEDICAL SCHOOL · PI CANVER, MATTHEW CHARLES · 2015 to 2017
$131k
Genome engineering tools for functional screening of non-coding elementsK99HG008171 · NHGRI · BROAD INSTITUTE, INC. · PI SANJANA, NEVILLE · 2015 to 2016
$125k
Howard Hughes Medical InstituteNCCDPHP CDC HHS 5DP1-MH100706NHGRI NIH HHS K99 HG008171NHGRI NIH HHS K99-HG008171NHGRI NIH HHS K99 HG008399NHGRI NIH HHS K99HG008399NHGRI NIH HHS R01 HG005085NHGRI NIH HHS R01HG005085NHLBI NIH HHS P01 HL032262NHLBI NIH HHS P01HL032262NHLBI NIH HHS R01 HL032259NHLBI NIH HHS R01 HL119099NHLBI NIH HHS R01HL119099NIDDK NIH HHS 5R01-DK097768NIDDK NIH HHS F30 DK103359NIDDK NIH HHS F30DK103359-01A1NIDDK NIH HHS K08 DK093705NIDDK NIH HHS K08DK093705NIDDK NIH HHS P30 DK049216NIDDK NIH HHS P30DK049216NIDDK NIH HHS R01 DK097768NIMH NIH HHS DP1 MH100706NIMH NIH HHS R01 MH110049PHS HHS R01 A1084905
6 · The paper itself

Abstract

Enhancers, critical determinants of cellular identity, are commonly recognized by correlative chromatin marks and gain-of-function potential, although only loss-of-function studies can demonstrate their requirement in the native genomic context. Previously, we identified an erythroid enhancer of human BCL11A, subject to common genetic variation associated with the fetal haemoglobin level, the mouse orthologue of which is necessary for erythroid BCL11A expression. Here we develop pooled clustered regularly interspaced palindromic repeat (CRISPR)-Cas9 guide RNA libraries to perform in situ saturating mutagenesis of the human and mouse enhancers. This approach reveals critical minimal features and discrete vulnerabilities of these enhancers. Despite conserved function of the composite enhancers, their architecture diverges. The crucial human sequences appear to be primate-specific. Through editing of primary human progenitors and mouse transgenesis, we validate the BCL11A erythroid enhancer as a target for fetal haemoglobin reinduction. The detailed enhancer map will inform therapeutic genome editing, and the screening approach described here is generally applicable to functional interrogation of non-coding genomic elements.

Indexed as

Genetic EngineeringAnimalsBase SequenceCarrier ProteinsCells, CulturedClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsCRISPR-Cas SystemsDNA-Binding ProteinsEnhancer Elements, GeneticErythroblastsFetal HemoglobinGenomeHumansMiceMolecular Sequence DataBCL11A protein, humanBcl11a protein, mouseCarrier ProteinsCRISPR-Associated ProteinsDNA-Binding ProteinsFetal HemoglobinNuclear ProteinsRepressor ProteinsRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID26375006
PMCPMC4644101
OpenAlexW1855348513

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.