Evidence map›Paper›PMID 26374901›Full record

ArticleJournal of biochemistry2016

Electron microscopic imaging revealed the flexible filamentous structure of the cell attachment protein P2 of Rice dwarf virus located around the icosahedral 5-fold axes.

Naoyuki Miyazaki, Akifumi Higashiura, Tomoko Higashiura, Fusamichi Akita, Hiroyuki Hibino, Toshihiro Omura, Atsushi Nakagawa, Kenji Iwasaki

Open access · bronzeAbstract read
In one paragraph

Article in Journal of biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Rice stripe virus hitchhikes the vector insect vitellogenin ligand-receptor pathway for ovary entry.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Naoyuki MiyazakiInstitute for Protein Research, Osaka University, Suita, Osaka, Japan; Supportive Center for Brain Research, National Institute for Physiological Sciences, Okazaki, Aichi, Japan; naomiya@nips.ac.jp.
Akifumi HigashiuraInstitute for Protein Research, Osaka University, Suita, Osaka, Japan;
Tomoko HigashiuraInstitute for Protein Research, Osaka University, Suita, Osaka, Japan;
Fusamichi AkitaLaboratory of Virology, National Agricultural Research Center, Tsukuba, Ibaraki, Japan; and Photosynthesis Research Center, Graduate School of Natural Science and Technology, Okayama University, Okayama, Okayama, Japan.
Hiroyuki HibinoLaboratory of Virology, National Agricultural Research Center, Tsukuba, Ibaraki, Japan; and.
Toshihiro OmuraLaboratory of Virology, National Agricultural Research Center, Tsukuba, Ibaraki, Japan; and.
Atsushi NakagawaInstitute for Protein Research, Osaka University, Suita, Osaka, Japan;
Kenji IwasakiInstitute for Protein Research, Osaka University, Suita, Osaka, Japan; ikenji@protein.osaka-u.ac.jp.
Central Region Agricultural Research Center · JPProtein Research Foundation · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The minor outer capsid protein P2 of Rice dwarf virus (RDV), a member of the genus Phytoreovirus in the family Reoviridae, is essential for viral cell entry. Here, we clarified the structure of P2 and the interactions to host insect cells. Negative stain electron microscopy (EM) showed that P2 proteins are monomeric and flexible L-shaped filamentous structures of ∼20 nm in length. Cryo-EM structure revealed the spatial arrangement of P2 in the capsid, which was prescribed by the characteristic virion structure. The P2 proteins were visualized as partial rod-shaped structures of ∼10 nm in length in the cryo-EM map and accommodated in crevasses on the viral surface around icosahedral 5-fold axes with hydrophobic interactions. The remaining disordered region of P2 assumed to be extended to the radial direction towards exterior. Electron tomography clearly showed that RDV particles were away from the cellular membrane at a uniform distance and several spike-like densities, probably corresponding to P2, connecting a viral particle to the host cellular membrane during cell entry. By combining the in vitro and in vivo structural information, we could gain new insights into the detailed mechanism of the cell entry of RDV.

Indexed as

Virus InternalizationAnimalsCapsidCapsid ProteinsCell MembraneCells, CulturedCryoelectron MicroscopyElectron Microscope TomographyHemipteraOryzaReoviridaeVirionCapsid Proteinsprotein P2, rice dwarf phytoreoviruscryo-electron microscopyelectron tomographyPhytoreovirusRice dwarf virusviral cell entry

Identifiers

PMID26374901
PMCPMC4892776
OpenAlexW1609595151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.