Evidence map›Paper›PMID 26374839›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Crystal structure reveals specific recognition of a G-quadruplex RNA by a β-turn in the RGG motif of FMRP.

Nikita Vasilyev, Anna Polonskaia, Jennifer C Darnell, Robert B Darnell, Dinshaw J Patel, Alexander Serganov

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 202 citations in OpenAlex.

  1. Review
  2. Article
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  8. In Silico Analysis of Potential Stabilizer Binding Sites at Protein-RNA Interfaces.Computational and structural biotechnology journal · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. FMR1 KH0-KH1 domains coordinate mExperimental cell research · 2025
    Article
  15. Article
  16. Article
  17. Contributions of Folded and Disordered Domains to RNA Binding by HNRNPR.bioRxiv : the preprint server for biology · 2025
    Article
  18. Article
  19. Review
  20. Coding relationship links RNA G-quadruplexes and protein RGG motifs in RNA-binding protein autoregulation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Nikita VasilyevDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016;
Anna PolonskaiaStructural Biology Program, Memorial Sloan Kettering Cancer Center, NY 10065;
Jennifer C DarnellLaboratory of Molecular Neuro-Oncology, The Rockefeller University, New York, NY 10065;
Robert B DarnellLaboratory of Molecular Neuro-Oncology, The Rockefeller University, New York, NY 10065; Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065; New York Genome Center, New York, NY, 10013.
Dinshaw J PatelStructural Biology Program, Memorial Sloan Kettering Cancer Center, NY 10065; pateld@mskcc.org Alexander.Serganov@nyumc.org.
Alexander SerganovDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016; pateld@mskcc.org Alexander.Serganov@nyumc.org.
Memorial Sloan Kettering Cancer Center · USNew York University · USHoward Hughes Medical Institute · USRockefeller University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
IDENTIFICATION OF FMRP TARGET RNASR01HD040647 · NICHD · ROCKEFELLER UNIVERSITY · PI DARNELL, JENNIFER C · 2001 to 2017
$4.5M
Posttranscriptional regulation by mRNA-binding shuttling and transport proteinsR01GM104962 · NIGMS · ROCKEFELLER UNIVERSITY · PI OHLER, UWE, PATEL, DINSHAW J · 2012 to 2016
$4.4M
RNA-protein interactions in Fragile X syndromeR21MH103655 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SERGANOV, ALEXANDER · 2013 to 2013
$168k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NICHD NIH HHS R01 HD040647NICHD NIH HHS R01HD040647NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM104962NIGMS NIH HHS TR01 GM104962NIMH NIH HHS R21 MH103655NIMH NIH HHS R21MH103655
6 · The paper itself

Abstract

Fragile X Mental Retardation Protein (FMRP) is a regulatory RNA binding protein that plays a central role in the development of several human disorders including Fragile X Syndrome (FXS) and autism. FMRP uses an arginine-glycine-rich (RGG) motif for specific interactions with guanine (G)-quadruplexes, mRNA elements implicated in the disease-associated regulation of specific mRNAs. Here we report the 2.8-Å crystal structure of the complex between the human FMRP RGG peptide bound to the in vitro selected G-rich RNA. In this model system, the RNA adopts an intramolecular K(+)-stabilized G-quadruplex structure composed of three G-quartets and a mixed tetrad connected to an RNA duplex. The RGG peptide specifically binds to the duplex-quadruplex junction, the mixed tetrad, and the duplex region of the RNA through shape complementarity, cation-π interactions, and multiple hydrogen bonds. Many of these interactions critically depend on a type I β-turn, a secondary structure element whose formation was not previously recognized in the RGG motif of FMRP. RNA mutagenesis and footprinting experiments indicate that interactions of the peptide with the duplex-quadruplex junction and the duplex of RNA are equally important for affinity and specificity of the RGG-RNA complex formation. These results suggest that specific binding of cellular RNAs by FMRP may involve hydrogen bonding with RNA duplexes and that RNA duplex recognition can be a characteristic RNA binding feature for RGG motifs in other proteins.

Indexed as

G-QuadruplexesModels, MolecularAmino Acid MotifsCrystallizationFragile X Messenger Ribonucleoprotein 1HumansMolecular Sequence DataProtein ConformationProtein FootprintingFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1FMRPfragile X syndromeG-quadruplexRGG boxRNA structure

Identifiers

PMID26374839
PMCPMC4593078
OpenAlexW2100232590

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.