Evidence map›Paper›PMID 26374597›Full record

ArticleG3 (Bethesda, Md.)2015

Genetic Linkage Mapping of Economically Important Traits in Cultivated Tetraploid Potato (Solanum tuberosum L.).

Alicia N Massa, Norma C Manrique-Carpintero, Joseph J Coombs, Daniel G Zarka, Anne E Boone, William W Kirk, Christine A Hackett, Glenn J Bryan, David S Douches

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Natural Variation ofInternational journal of molecular sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alicia N MassaDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824.
Norma C Manrique-CarpinteroDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824.
Joseph J CoombsDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824.
Daniel G ZarkaDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824.
Anne E BooneDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824.
William W KirkDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824.
Christine A HackettBiomathematics and Statistics Scotland, Invergowrie, Dundee, DD2 5DA, United Kingdom.
Glenn J BryanThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.
David S DouchesDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824 douchesd@msu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The objective of this study was to construct a single nucleotide polymorphism (SNP)-based genetic map at the cultivated tetraploid level to locate quantitative trait loci (QTL) contributing to economically important traits in potato (Solanum tuberosum L.). The 156 F1 progeny and parents of a cross (MSL603) between "Jacqueline Lee" and "MSG227-2" were genotyped using the Infinium 8303 Potato Array. Furthermore, the progeny and parents were evaluated for foliar late blight reaction to isolates of the US-8 genotype of Phytophthora infestans (Mont.) de Bary and vine maturity. Linkage analyses and QTL mapping were performed using a novel approach that incorporates allele dosage information. The resulting genetic maps contained 1972 SNP markers with an average density of 1.36 marker per cM. QTL mapping identified the major source of late blight resistance in "Jacqueline Lee." The best SNP marker mapped ~0.54 Mb from a resistance hotspot on the long arm of chromosome 9. For vine maturity, the major-effect QTL was located on chromosome 5 with allelic effects from both parents. A candidate SNP marker for this trait mapped ~0.25 Mb from the StCDF1 gene, which is a candidate gene for the maturity trait. The identification of markers for P. infestans resistance will enable the introgression of multiple sources of resistance through marker-assisted selection. Moreover, the discovery of a QTL for late blight resistance not linked to the QTL for vine maturity provides the opportunity to use marker-assisted selection for resistance independent of the selection for vine maturity classifications.

Indexed as

Genetic LinkageQuantitative Trait LociTetraploidyDisease ResistancePhytophthora infestansPolymorphism, Single NucleotideSolanum tuberosumautotetraploidgenetic linkage mappotatoQTLsingle-nucleotide polymorphism

Identifiers

PMID26374597
PMCPMC4632055

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.