Evidence map›Paper›PMID 26373644›Full record

ArticleMicrobial ecology2016

ATR-FTIR Spectroscopy Highlights the Problem of Distinguishing Between Exophiala dermatitidis and E. phaeomuriformis Using MALDI-TOF MS.

Çağrı Ergin, Yaşar Gök, Yasemin Bayğu, Ramazan Gümral, Betil Özhak-Baysan, Aylin Döğen, Dilara Öğünç, Macit Ilkit, Seyedmojtaba Seyedmousavi

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Behavior of deteriogenic fungi in aviation fuels (fossil and biofuel) during simulated storage.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  3. Exophiala dermatitidis.World journal of clinical cases · 2021
    Article
  4. Virulence · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Çağrı ErginDepartment of Microbiology, Faculty of Medicine, Pamukkale University, Denizli, Turkey. cagri@pau.edu.tr.
Yaşar GökChemistry Department, Faculty of Science and Arts, Pamukkale University, Denizli, Turkey.
Yasemin BayğuChemistry Department, Faculty of Science and Arts, Pamukkale University, Denizli, Turkey.
Ramazan GümralDepartment of Microbiology, Gülhane Military Medical Academy, Ankara, Turkey.
Betil Özhak-BaysanDepartment of Microbiology, Faculty of Medicine, University of Akdeniz, Antalya, Turkey.
Aylin DöğenDepartment of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Mersin, Mersin, Turkey.
Dilara ÖğünçDepartment of Microbiology, Faculty of Medicine, University of Akdeniz, Antalya, Turkey.
Macit IlkitDivision of Mycology, Department of Microbiology, Faculty of Medicine, University of Çukurova, Adana, Turkey.
Seyedmojtaba SeyedmousaviDepartment of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center, Rotterdam, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The present study compared two chemical-based methods, namely, matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS) and attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy, to understand the misidentification of Exophiala dermatitidis and Exophiala phaeomuriformis. The study utilized 44 E. dermatitidis and 26 E. phaeomuriformis strains, which were partially treated with strong acids and bases for further evaluation. MALDI-TOF MS and ATR-FTIR spectroscopy data of the two Exophiala species were compared. Data groupings were observed for the chromic acid- and nitric acid-treated species when the black yeast sources were categorized as creosoted-oak sleepers, concrete sleepers, or dishwasher isolates. The MALDI-TOF MS data for the metalloenzyme-containing regions were consistent with the ATR-FTIR spectroscopy data. These results indicated that environmental isolates might contain metals not found in human isolates and might interfere with chemical-based identification methods. Therefore, MALDI-TOF MS reference libraries should be created for clinical strains and should exclude petroleum-associated environmental isolates.

Indexed as

ExophialaHumansMycological Typing TechniquesPhaeohyphomycosisSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSpectroscopy, Fourier Transform InfraredTandem Mass SpectrometryChemical analysisİdentificationİnfrared spectroscopyMALDI mass spectrometryTaxonomy

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.