Evidence map›Paper›PMID 26372103›Full record

ArticlePLoS neglected tropical diseases2015

Genome-Wide Scan and Test of Candidate Genes in the Snail Biomphalaria glabrata Reveal New Locus Influencing Resistance to Schistosoma mansoni.

Jacob A Tennessen, Kaitlin M Bonner, Stephanie R Bollmann, Joel A Johnstun, Jan-Ying Yeh, Melanie Marine, Hannah F Tavalire, Christopher J Bayne, Michael S Blouin

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  8. The genome and transcriptome of the snailbioRxiv : the preprint server for biology · 2023
    Article
  9. Infection with Trematodes in Littorina obtusata Snails (Gastropoda: Littorinidae) with Different Shell Color Genotypes.Doklady biological sciences : proceedings of the Academy of Sciences of the USSR, Biological sciences sections · 2023
    Article
  10. Article
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  13. PeerJ · 2022
    Article
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  18. Article
  19. Biomphalaria glabrata immunity: Post-genome advances.Developmental and comparative immunology · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jacob A TennessenDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Kaitlin M BonnerDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Stephanie R BollmannDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Joel A JohnstunDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Jan-Ying YehDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Melanie MarineDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Hannah F TavalireDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Christopher J BayneDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Michael S BlouinDepartment of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America.
Oregon State University · US

Funding

UNDERLYING MECHANISMS OF SCHISTOSOME/SNAIL COMPATIBILITYR01AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 1989 to 2012
$3.1M
A new genetic mechanism in snails that controls transmission of schistosomesR01AI109134 · NIAID · OREGON STATE UNIVERSITY · PI BLOUIN, MICHAEL SCOTT · 2014 to 2016
$1.1M
Underlying mechanisms of schistosome/snail compatibilityR21AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 2001 to 2001
$273k
SCHISTOSOME-SNAIL COMPATIBILITY: UNDERLYING MECHANISMSR22AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 1985 to 1991
–
NIAID NIH HHS AI016137NIAID NIH HHS AI109134NIAID NIH HHS R01 AI016137NIAID NIH HHS R01 AI109134NIAID NIH HHS R21 AI016137
6 · The paper itself

Abstract

backgroundNew strategies to combat the global scourge of schistosomiasis may be revealed by increased understanding of the mechanisms by which the obligate snail host can resist the schistosome parasite. However, few molecular markers linked to resistance have been identified and characterized in snails. METHODOLOGY/PRINCIPAL

findingsHere we test six independent genetic loci for their influence on resistance to Schistosoma mansoni strain PR1 in the 13-16-R1 strain of the snail Biomphalaria glabrata. We first identify a genomic region, RADres, showing the highest differentiation between susceptible and resistant inbred lines among 1611 informative restriction-site associated DNA (RAD) markers, and show that it significantly influences resistance in an independent set of 439 outbred snails. The additive effect of each RADres resistance allele is 2-fold, similar to that of the previously identified resistance gene sod1. The data fit a model in which both loci contribute independently and additively to resistance, such that the odds of infection in homozygotes for the resistance alleles at both loci (13% infected) is 16-fold lower than the odds of infection in snails without any resistance alleles (70% infected). Genome-wide linkage disequilibrium is high, with both sod1 and RADres residing on haplotype blocks >2 Mb, and with other markers in each block also showing significant effects on resistance; thus the causal genes within these blocks remain to be demonstrated. Other candidate loci had no effect on resistance, including the Guadeloupe Resistance Complex and three genes (aif, infPhox, and prx1) with immunological roles and expression patterns tied to resistance, which must therefore be trans-regulated. CONCLUSIONS/SIGNIFICANCE: The loci RADres and sod1 both have strong effects on resistance to S. mansoni. Future approaches to control schistosomiasis may benefit from further efforts to characterize and harness this natural genetic variation.

Indexed as

AnimalsBiomphalariaGenetic LociGenetic MarkersGenome-Wide Association StudyHost-Parasite InteractionsHumansLinkage DisequilibriumMiceMolecular Sequence DataSchistosoma mansoniSequence Analysis, DNAGenetic Markers

Identifiers

PMID26372103
PMCPMC4570800
OpenAlexW1635442606

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.