Evidence map›Paper›PMID 26371436›Full record

ArticleJournal of medicinal chemistry2016

Structure-Based Inhibitor Design for Evaluation of a CYP3A4 Pharmacophore Model.

Parminder Kaur, A Richard Chamberlin, Thomas L Poulos, Irina F Sevrioukova

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 107 citations in OpenAlex.

  1. Review
  2. Article
  3. Interaction of cytochrome P450 3A4 with the hydrophilic ligand tetraethylene glycol.Biochemical and biophysical research communications · 2026
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  6. Review
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  10. NiScientific reports · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Parminder KaurDepartments of †Pharmaceutical Sciences, ‡Chemistry, and §Molecular Biology and Biochemistry, University of California-Irvine , Irvine, California 92697, United States.
A Richard ChamberlinDepartments of †Pharmaceutical Sciences, ‡Chemistry, and §Molecular Biology and Biochemistry, University of California-Irvine , Irvine, California 92697, United States.
Thomas L PoulosDepartments of †Pharmaceutical Sciences, ‡Chemistry, and §Molecular Biology and Biochemistry, University of California-Irvine , Irvine, California 92697, United States.
Irina F SevrioukovaDepartments of †Pharmaceutical Sciences, ‡Chemistry, and §Molecular Biology and Biochemistry, University of California-Irvine , Irvine, California 92697, United States.
University of California, Irvine · US

Funding

STRUCTURAL STUDIES ON NITRIC OXIDE SYNTHASER01GM057353 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POULOS, THOMAS L · 1998 to 2018
$6.8M
THREE-DIMENSIONAL STRUCTURE OF CYTOCHROME P450R01GM033688 · NIGMS · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI POULOS, THOMAS L · 1985 to 2013
$3.7M
NIGMS NIH HHS R01 GM033688NIGMS NIH HHS R01 GM057353
6 · The paper itself

Abstract

Human cytochrome P450 3A4 (CYP3A4) is a key xenobiotic-metabolizing enzyme that oxidizes and clears the majority of drugs. CYP3A4 inhibition may lead to drug-drug interactions, toxicity, and other adverse effects but, in some cases, could be beneficial and enhance therapeutic efficiency of coadministered pharmaceuticals that are metabolized by CYP3A4. On the basis of our investigations of analogs of ritonavir, a potent CYP3A4 inactivator and pharmacoenhancer, we have built a pharmacophore model for a CYP3A4-specific inhibitor. This study is the first attempt to test this model using a set of rationally designed compounds. The functional and structural data presented here agree well with the proposed pharmacophore. In particular, we confirmed the importance of a flexible backbone, the H-bond donor/acceptor moiety, and aromaticity of the side group analogous to Phe-2 of ritonavir and demonstrated the leading role of hydrophobic interactions at the sites adjacent to the heme and phenylalanine cluster in the ligand binding process. The X-ray structures of CYP3A4 bound to the rationally designed inhibitors provide deeper insights into the mechanism of the CYP3A4-ligand interaction. Most importantly, two of our compounds (15a and 15b) that are less complex than ritonavir have comparable submicromolar affinity and inhibitory potency for CYP3A4 and, thus, could serve as templates for synthesis of second generation inhibitors for further evaluation and optimization of the pharmacophore model.

Indexed as

Models, ChemicalCrystallography, X-RayCytochrome P-450 CYP3ACytochrome P-450 CYP3A InhibitorsDrug DesignHumansKineticsMolecular StructureCYP3A4 protein, humanCytochrome P-450 CYP3ACytochrome P-450 CYP3A Inhibitors

Identifiers

PMID26371436
PMCPMC4998966
OpenAlexW2343521265

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.