Evidence map›Paper›PMID 26370088›Full record

ArticleThe Journal of biological chemistry2015

Two hydrophobic residues can determine the specificity of mitogen-activated protein kinase docking interactions.

A Jane Bardwell, Lee Bardwell

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

  1. Bipartite binding of the intrinsically disordered scaffold protein JIP1 to the kinase JNK1.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Linear motif specificity in signaling through p38α and ERK2 mitogen-activated protein kinases.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  9. Mapping low-affinity/high-specificity peptide-protein interactions using ligand-footprinting mass spectrometry.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

A Jane BardwellFrom the Department of Developmental and Cell Biology, Center for Complex Biological Systems, University of California, Irvine, California 92697.
Lee BardwellFrom the Department of Developmental and Cell Biology, Center for Complex Biological Systems, University of California, Irvine, California 92697 bardwell@uci.edu.ORCID http://orcid.org/0000-0002-2393-8363
University of California, Irvine · US

Funding

Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI NIE, QING · 2007 to 2016
$25.1M
MAP KINASE CASCADE SIGNAL TRANSMISSION AND SPECIFICITYR01GM060366 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARDWELL, LEE S · 2000 to 2008
$2.2M
An Integrative Analysis of MAPK Signaling in Budding YeastR01GM084332 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI LEVCHENKO, ANDRE · 2008 to 2011
$1.2M
NIGMS NIH HHS P50 GM076516NIGMS NIH HHS P50 GM76516NIGMS NIH HHS R01 GM060366NIGMS NIH HHS R01 GM084332NIGMS NIH HHS R01 GM60366NIGMS NIH HHS R01 GM84332
6 · The paper itself

Abstract

MAPKs bind to many of their upstream regulators and downstream substrates via a short docking motif (the D-site) on their binding partner. MAPKs that are in different families (e.g. ERK, JNK, and p38) can bind selectively to D-sites in their authentic substrates and regulators while discriminating against D-sites in other pathways. Here we demonstrate that the short hydrophobic region at the distal end of the D-site plays a critical role in determining the high selectivity of JNK MAPKs for docking sites in their cognate MAPK kinases. Changing just 1 or 2 key hydrophobic residues in this submotif is sufficient to turn a weak JNK-binding D-site into a strong one, or vice versa. These specificity-determining differences are also found in the D-sites of the ETS family transcription factors Elk-1 and Net. Moreover, swapping two hydrophobic residues between these D-sites switches the relative efficiency of Elk-1 and Net as substrates for ERK versus JNK, as predicted. These results provide new insights into docking specificity and suggest that this specificity can evolve rapidly by changes to just 1 or 2 amino acids.

Indexed as

Activating Transcription Factor 2Amino Acid SequenceAnimalsBinding SitesGene Expression RegulationHumansHydrophobic and Hydrophilic InteractionsIsoenzymesJNK Mitogen-Activated Protein KinasesMAP Kinase Kinase 4MAP Kinase Kinase 6MiceMitogen-Activated Protein Kinase 1Molecular Docking SimulationMolecular Sequence DataProtein BindingActivating Transcription Factor 2ATF2 protein, humanIsoenzymesJNK Mitogen-Activated Protein KinasesMAP2K4 protein, humanMAP2K6 protein, humanMapk1 protein, mouseMAP Kinase Kinase 4MAP Kinase Kinase 6Mitogen-Activated Protein Kinase 1Recombinant Fusion Proteinscell signalingc-Jun N-terminal kinase (JNK)docking sitedual-specificity kinasemitogen-activated protein kinase (MAPK)phosphorylationprotein complexprotein kinaseprotein phosphorylationsubstrate specificity

Identifiers

PMID26370088
PMCPMC4646321
OpenAlexW2253610292

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.