Evidence map›Paper›PMID 26370085›Full record

ArticleThe Journal of biological chemistry2015

Mechanism of cAMP Partial Agonism in Protein Kinase G (PKG).

Bryan VanSchouwen, Rajeevan Selvaratnam, Rajanish Giri, Robin Lorenz, Friedrich W Herberg, Choel Kim, Giuseppe Melacini

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. Pooled it
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  14. Keep a lid on it: A troika in kinase allostery.The Journal of biological chemistry · 2020
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  15. Mechanism of allosteric inhibition in theThe Journal of biological chemistry · 2020
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  16. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Bryan VanSchouwenFrom the Departments of Chemistry and Chemical Biology and.
Rajeevan SelvaratnamFrom the Departments of Chemistry and Chemical Biology and.
Rajanish GiriFrom the Departments of Chemistry and Chemical Biology and.
Robin Lorenzthe Department of Biochemistry, Kassel University, Heinrich Plett Strasse 40, 34132 Kassel, Germany, and.
Friedrich W Herbergthe Department of Biochemistry, Kassel University, Heinrich Plett Strasse 40, 34132 Kassel, Germany, and.
Choel Kimthe Verna and Marrs McLean Department of Biochemistry and Molecular Biology and Department of Pharmacology, Baylor College of Medicine, Houston, Texas 77030.
Giuseppe MelaciniFrom the Departments of Chemistry and Chemical Biology and Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S 4M1, Canada, melacin@mcmaster.ca.
McMaster University · CAUniversity of Kassel · DEBaylor College of Medicine · US

Funding

Targeting mechanisms of cGMP dependent protein kinases by peptide arrays and crysR01GM090161 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2010 to 2018
$2.9M
Canadian Institutes of Health ResearchNIGMS NIH HHS R01 GM090161
6 · The paper itself

Abstract

Protein kinase G (PKG) is a major receptor of cGMP and controls signaling pathways often distinct from those regulated by cAMP. Hence, the selective activation of PKG by cGMP versus cAMP is critical. However, the mechanism of cGMP-versus-cAMP selectivity is only limitedly understood. Although the C-terminal cyclic nucleotide-binding domain B of PKG binds cGMP with higher affinity than cAMP, the intracellular concentrations of cAMP are typically higher than those of cGMP, suggesting that the cGMP-versus-cAMP selectivity of PKG is not controlled uniquely through affinities. Here, we show that cAMP is a partial agonist for PKG, and we elucidate the mechanism for cAMP partial agonism through the comparative NMR analysis of the apo, cGMP-, and cAMP-bound forms of the PKG cyclic nucleotide-binding domain B. We show that although cGMP activation is adequately explained by a two-state conformational selection model, the partial agonism of cAMP arises from the sampling of a third, partially autoinhibited state.

Indexed as

Models, MolecularCyclic AMPCyclic GMPCyclic GMP-Dependent Protein Kinase Type IHumansProtein Structure, TertiarySubstrate SpecificityCyclic AMPCyclic GMPCyclic GMP-Dependent Protein Kinase Type Iagonismallosteric regulationcell signalingcyclic AMP (cAMP)cyclic GMP (cGMP)molecular dynamicsnuclear magnetic resonance (NMR)protein kinase G (PKG)

Identifiers

PMID26370085
PMCPMC4661378
OpenAlexW2271389813

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.