Evidence map›Paper›PMID 26370083›Full record

ArticleThe Journal of biological chemistry2015

Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans.

Soumya Mohanty, Chacko Jobichen, Vishnu Priyanka Reddy Chichili, Adrián Velázquez-Campoy, Boon Chuan Low, Christopher W V Hogue, J Sivaraman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Genome size evolution in the Archaea.Emerging topics in life sciences · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Soumya MohantyDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore.
Chacko JobichenDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore.
Vishnu Priyanka Reddy ChichiliDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore.
Adrián Velázquez-Campoythe Institute of Biocomputation and Physics of Complex Systems (BIFI), Joint-Unit Institute of Physical Chemistry "Rocasolano (IQFR)-Spanish National Research Council (CSIC)-BIFI, and Department of Biochemistry and Molecular and Cell Biology, University of Zaragoza and Fundacion ARAID, Government of Aragon, 50018 Zaragoza, Spain.
Boon Chuan LowDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore,; Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore. Electronic address: dbslowbc@nus.edu.sg.
Christopher W V HogueDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore,; Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore.
J SivaramanDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore,. Electronic address: dbsjayar@nus.edu.sg.
National University of Singapore · SGInstituto de Química Física Blas Cabrera · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ATP synthesis is a critical and universal life process carried out by ATP synthases. Whereas eukaryotic and prokaryotic ATP synthases are well characterized, archaeal ATP synthases are relatively poorly understood. The hyperthermophilic archaeal parasite, Nanoarcheaum equitans, lacks several subunits of the ATP synthase and is suspected to be energetically dependent on its host, Ignicoccus hospitalis. This suggests that this ATP synthase might be a rudimentary machine. Here, we report the crystal structures and biophysical studies of the regulatory subunit, NeqB, the apo-NeqAB, and NeqAB in complex with nucleotides, ADP, and adenylyl-imidodiphosphate (non-hydrolysable analog of ATP). NeqB is ∼20 amino acids shorter at its C terminus than its homologs, but this does not impede its binding with NeqA to form the complex. The heterodimeric NeqAB complex assumes a closed, rigid conformation irrespective of nucleotide binding; this differs from its homologs, which require conformational changes for catalytic activity. Thus, although N. equitans possesses an ATP synthase core A3B3 hexameric complex, it might not function as a bona fide ATP synthase.

Indexed as

Amino Acid SequenceArchaeal ProteinsATP Synthetase ComplexesCatalytic DomainCrystallography, X-RayEnzyme ActivationHydrogen BondingModels, MolecularMolecular Sequence DataNanoarchaeotaPhylogenyProtein ConformationProtein Structure, QuaternaryProtein SubunitsSequence Homology, Amino AcidStatic ElectricityArchaeal ProteinsATP Synthetase ComplexesProtein SubunitsarchaeaATP synthasecatalytic corecrystal structureevolutionNanoarchaeum equitansprotein complex

Identifiers

PMID26370083
PMCPMC4646375
OpenAlexW2202635739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.