Evidence map›Paper›PMID 26368531›Full record

ArticleBiochemistry2015

Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots.

Yan Wang, Huili Yao, Yuan Cheng, Scott Lovell, Kevin P Battaile, C Russell Midaugh, Mario Rivera

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

  1. Influence of heme and pH on the oligomeric states of Brucella melitensis bacterioferritin.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. Review
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  5. Article
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  11. Draft Genome Sequence ofEvolutionary bioinformatics online · 2024
    Article
  12. Review
  13. Review
  14. Article
  15. Biomolecules · 2022
    Article
  16. Article
  17. Electron Transfer from Haem to the Di-Iron Ferroxidase Centre in Bacterioferritin.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2021
    Article
  18. Iron Oxidation inAngewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2021
    Article
  19. Article
  20. Electron Transfer from Haem to the Di-Iron Ferroxidase Centre in Bacterioferritin.Angewandte Chemie (International ed. in English) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yan WangDepartment of Chemistry, University of Kansas , Multidisciplinary Research Building, 2030 Becker Drive, Room 220E, Lawrence, Kansas 66047, United States.
Huili YaoDepartment of Chemistry, University of Kansas , Multidisciplinary Research Building, 2030 Becker Drive, Room 220E, Lawrence, Kansas 66047, United States.
Yuan ChengDepartment of Pharmaceutical Chemistry, University of Kansas , Multidisciplinary Research Building, 2030 Becker Drive, Room 320G, Lawrence, Kansas 66047, United States.
Scott LovellProtein Structure Laboratory, Del Shankel Structural Biology Center, University of Kansas , 2034 Becker Drive, Lawrence, Kansas 66047, United States.
Kevin P BattaileIMCA-CAT, Hauptman Woodward Medical Research Institute , 9700 South Cass Avenue, Building 435A, Argonne, Illinois 60439, United States.
C Russell MidaughDepartment of Pharmaceutical Chemistry, University of Kansas , Multidisciplinary Research Building, 2030 Becker Drive, Room 320G, Lawrence, Kansas 66047, United States.
Mario RiveraDepartment of Chemistry, University of Kansas , Multidisciplinary Research Building, 2030 Becker Drive, Room 220E, Lawrence, Kansas 66047, United States.
University of Kansas · USHauptman-Woodward Medical Research Institute · US

Funding

TRAFFICKING OF THE PLASMA MEMBRANE CA2+-ATPASE TO RAFTSP20RR017708 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI HOLYOAK, TODD · 2002 to 2011
$20.1M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Protein Structure and FunctionP20GM103420 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2012 to 2012
$2.0M
NCRR NIH HHS 5P20RR017708-10NCRR NIH HHS P20 RR017708NIGMS NIH HHS 8 P20 GM 103420NIGMS NIH HHS P20 GM103420NIGMS NIH HHS P30 GM110761
6 · The paper itself

Abstract

Mobilization of iron stored in the interior cavity of BfrB requires electron transfer from the [2Fe−2S] cluster in Bfd to the core iron in BfrB. A crystal structure of the Pseudomonas aeruginosa BfrB:Bfd complex revealed that BfrB can bind up to 12 Bfd molecules at 12 structurally identical binding sites, placing the [2Fe−2S] cluster of each Bfd immediately above a heme group in BfrB [Yao, H., et al. (2012) J. Am. Chem. Soc., 134, 13470−13481]. We report here study aimed at characterizing the strength of the P. aeruginosa BfrB:Bfd association using surface plasmon resonance and isothermal titration calorimetry as well as determining the binding energy hot spots at the protein−protein interaction interface. The results show that the 12 Bfd-binding sites on BfrB are equivalent and independent and that the protein−protein association at each of these sites is driven entropically and is characterized by a dissociation constant (Kd) of approximately 3 μM. Determination of the binding energy hot spots was carried out by replacing certain residues that comprise the protein−protein interface with alanine and by evaluating the effect of the mutation on Kd and on the efficiency of core iron mobilization from BfrB. The results identified hot spot residues in both proteins [LB 68, EA 81, and EA 85 in BfrB (superscript for residue number and subscript for chain) and Y2 and L5 in Bfd] that network at the interface to produce a highly complementary hot region for the interaction. The hot spot residues are conserved in the amino acid sequences of Bfr and Bfd proteins from a number of Gram-negative pathogens, indicating that the BfrB:Bfd interaction is of widespread significance in bacterial iron metabolism.

Indexed as

Bacterial ProteinsCrystallography, X-RayCytochrome b GroupFerredoxinsFerritinsHumansModels, MolecularMutationProtein ConformationProtein Interaction MapsPseudomonas aeruginosaPseudomonas InfectionsThermodynamicsBacterial ProteinsbacterioferritinCytochrome b GroupFerredoxinsFerritins

Identifiers

PMID26368531
PMCPMC4708090
OpenAlexW2244199165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.