Evidence map›Paper›PMID 26368470›Full record

ArticleOptics express2015

Deconvolution of fluorescence lifetime imaging microscopy by a library of exponentials.

Daniel U Campos-Delgado, O Gutierrez Navarro, E R Arce-Santana, Alex J Walsh, Melissa C Skala, Javier A Jo

Abstract read
In one paragraph

Article in Optics express, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daniel U Campos-Delgado
O Gutierrez Navarro
E R Arce-Santana
Alex J Walsh
Melissa C Skala
Javier A Jo

Funding

Morphological and Molecular Imaging System for in vivo Atherosclerosis ResearchR01HL111361 · NHLBI · TEXAS ENGINEERING EXPERIMENT STATION · PI APPLEGATE, BRIAN E. · 2012 to 2016
$1.7M
Cellular-level Optical Metabolic Imaging to Predict Drug Response in CancerR01CA185747 · NCI · VANDERBILT UNIVERSITY · PI SKALA, MELISSA CAROLINE · 2014 to 2019
$1.6M
Multiresolution FLIM and Reflectance Confocal Microscopy to Detect DysplasiaR01CA138653 · NCI · TEXAS ENGINEERING EXPERIMENT STATION · PI MAITLAND, KRISTEN C. · 2010 to 2014
$1.5M
Structured illumination multispectral fluorescence lifetime microendoscopy to detect oral premalignanciesR03CA191860 · NCI · TEXAS ENGINEERING EXPERIMENT STATION · PI MALIK, BILAL · 2015 to 2016
$140k
NCI NIH HHS 1R01CA138653NCI NIH HHS 1R03CA191860NCI NIH HHS R01 CA185747NHLBI NIH HHS 1R01HL111361NHLBI NIH HHS R01 HL111361
6 · The paper itself

Abstract

Fluorescence lifetime microscopy imaging (FLIM) is an optic technique that allows a quantitative characterization of the fluorescent components of a sample. However, for an accurate interpretation of FLIM, an initial processing step is required to deconvolve the instrument response of the system from the measured fluorescence decays. In this paper, we present a novel strategy for the deconvolution of FLIM data based on a library of exponentials. Our approach searches for the scaling coefficients of the library by non-negative least squares approximations plus Thikonov/l(2) or l(1) regularization terms. The parameters of the library are given by the lower and upper bounds in the characteristic lifetimes of the exponential functions and the size of the library, where we observe that this last variable is not a limiting factor in the resulting fitting accuracy. We compare our proposal to nonlinear least squares and global non-linear least squares estimations with a multi-exponential model, and also to constrained Laguerre-base expansions, where we visualize an advantage of our proposal based on Thikonov/l(2) regularization in terms of estimation accuracy, computational time, and tuning strategy. Our validation strategy considers synthetic datasets subject to both shot and Gaussian noise and samples with different lifetime maps, and experimental FLIM data of ex-vivo atherosclerotic plaques and human breast cancer cells.

Indexed as

AlgorithmsData Interpretation, StatisticalImage EnhancementImage Interpretation, Computer-AssistedMicroscopy, FluorescenceMolecular ImagingReproducibility of ResultsSensitivity and Specificity

Identifiers

PMID26368470
PMCPMC4646519

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.