Evidence map›Paper›PMID 26368310›Full record

ArticlePlant signaling & behavior2015

Dissection of autophagy in tobacco BY-2 cells under sucrose starvation conditions using the vacuolar H(+)-ATPase inhibitor concanamycin A and the autophagy-related protein Atg8.

Kanako Yano, Takahiro Yanagisawa, Kyosuke Mukae, Yasuo Niwa, Yuko Inoue, Yuji Moriyasu

Open access · hybridAbstract read
In one paragraph

Article in Plant signaling & behavior, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kanako Yanoa Graduate School of Food and Nutritional Sciences; University of Shizuoka ; Shizuoka , Japan.
Takahiro Yanagisawab Department of Regulatory Biology ; Graduate School of Science and Engineering; Saitama University ; Saitama , Japan.
Kyosuke Mukaeb Department of Regulatory Biology ; Graduate School of Science and Engineering; Saitama University ; Saitama , Japan.
Yasuo Niwaa Graduate School of Food and Nutritional Sciences; University of Shizuoka ; Shizuoka , Japan.
Yuko Inoueb Department of Regulatory Biology ; Graduate School of Science and Engineering; Saitama University ; Saitama , Japan.
Yuji Moriyasub Department of Regulatory Biology ; Graduate School of Science and Engineering; Saitama University ; Saitama , Japan.
Saitama University · JPUniversity of Shizuoka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tobacco BY-2 cells undergo autophagy in sucrose-free culture medium, which is the process mostly responsible for intracellular protein degradation under these conditions. Autophagy was inhibited by the vacuolar H(+)-ATPase inhibitors concanamycin A and bafilomycin A1, which caused the accumulation of autophagic bodies in the central vacuoles. Such accumulation did not occur in the presence of the autophagy inhibitor 3-methyladenine, and concanamycin in turn inhibited the accumulation of autolysosomes in the presence of the cysteine protease inhibitor E-64c. Electron microscopy revealed not only that the autophagic bodies were accumulated in the central vacuole, but also that autophagosome-like structures were more frequently observed in the cytoplasm in treatments with concanamycin, suggesting that concanamycin affects the morphology of autophagosomes in addition to raising the pH of the central vacuole. Using BY-2 cells that constitutively express a fusion protein of autophagosome marker protein Atg8 and green fluorescent protein (GFP), we observed the appearance of autophagosomes by fluorescence microscopy, which is a reliable morphological marker of autophagy, and the processing of the fusion protein to GFP, which is a biochemical marker of autophagy. Together, these results suggest the involvement of vacuole type H(+)-ATPase in the maturation step of autophagosomes to autolysosomes in the autophagic process of BY-2 cells. The accumulation of autophagic bodies in the central vacuole by concanamycin is a marker of the occurrence of autophagy; however, it does not necessarily mean that the central vacuole is the site of cytoplasm degradation.

Indexed as

AdenineAutophagyCells, CulturedCysteine Proteinase InhibitorsEnzyme InhibitorsFluorescenceGreen Fluorescent ProteinsHydrogen-Ion ConcentrationIntracellular MembranesLeucineLysosomesMacrolidesNicotianaPhagosomesPlant ProteinsProteolysis3-methyladenineAdenineconcanamycin ACysteine Proteinase InhibitorsEnzyme InhibitorsGreen Fluorescent ProteinsLeucineMacrolidesN-(N-(3-carboxyoxirane-2-carbonyl)leucyl)isoamylaminePlant ProteinsRecombinant Fusion ProteinsSucroseVacuolar Proton-Translocating ATPasesautolysosome/autophagosomeautophagyconcanamycinE-64ctobacco BY-2vacuole

Identifiers

PMID26368310
PMCPMC4883836
OpenAlexW2183693774

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.