Evidence map›Paper›PMID 26367797›Full record

ArticleNature2015

The UK10K project identifies rare variants in health and disease.

UK10K Consortium, Klaudia Walter, Josine L Min, Jie Huang, Lucy Crooks, Yasin Memari, Shane McCarthy, John R B Perry, ChangJiang Xu, Marta Futema and 19 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05661305 (Aswan Heart Centre - Egyptian Healthy Volunteers), which is not on this map. Cited by 647 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
647citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05661305 recruitingnot on this mapstarted 2019, after this paper: background citation

Aswan Heart Centre - Egyptian Healthy Volunteers

Typeobservational_patient_registrySponsorMagdi Yacoub Heart FoundationRan2019 to 2030Enrolled1,000ConditionsGenetic Predisposition to DiseaseArmsWhole Genome Sequencing to compare healthy volunteers genome with that of cardiomyopathies patients.
3 · Its place in the literature

Who cites it

647 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. X-linked genetic associations in sporadic thoracic aortic dissection.American journal of medical genetics. Part A · 2024
    Pooled it
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587 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

UK10K Consortium
Klaudia Walter
Josine L Min
Jie Huang
Lucy Crooks
Yasin Memari
Shane McCarthy
John R B Perry
ChangJiang Xu
Marta Futema
Daniel Lawson
Valentina Iotchkova
Stephan Schiffels
Audrey E Hendricks
Petr Danecek
Rui Li
James Floyd
Louise V Wain
Inês Barroso
Steve E Humphries
Matthew E Hurles
Eleftheria Zeggini
Jeffrey C Barrett
Vincent Plagnol
J Brent Richards
Celia M T Greenwood
Nicholas J Timpson
Richard Durbin
Nicole Soranzo

Funding

British Heart Foundation PG/07/045/22690British Heart Foundation RG/08/008/25291British Heart Foundation RG/10/13/28570British Heart Foundation RG/10/17/28553Chief Scientist Office CZD/16/6/4Chief Scientist Office SCD/12Medical Research Council G0500870Medical Research Council G0800509Medical Research Council G0801843Medical Research Council G0902313Medical Research Council MC_PC_15018Medical Research Council MC_U106179472Medical Research Council MC_UU_12012/5Medical Research Council MC_UU_12013/1Medical Research Council MC_UU_12013/3Medical Research Council MC_UU_12013/4Medical Research Council MC_UU_12015/1Medical Research Council MC_UU_12015/2Medical Research Council MR/J012165/1Medical Research Council MR/K013351/1Medical Research Council MR/L010305/1Wellcome Trust 091551Wellcome Trust 095515Wellcome Trust 095564Wellcome Trust 096599Wellcome Trust 098498Wellcome Trust 100140Wellcome Trust 100574Wellcome Trust 102215Wellcome Trust 104036Wellcome Trust 104125Wellcome Trust WT091310
6 · The paper itself

Abstract

The contribution of rare and low-frequency variants to human traits is largely unexplored. Here we describe insights from sequencing whole genomes (low read depth, 7×) or exomes (high read depth, 80×) of nearly 10,000 individuals from population-based and disease collections. In extensively phenotyped cohorts we characterize over 24 million novel sequence variants, generate a highly accurate imputation reference panel and identify novel alleles associated with levels of triglycerides (APOB), adiponectin (ADIPOQ) and low-density lipoprotein cholesterol (LDLR and RGAG1) from single-marker and rare variant aggregation tests. We describe population structure and functional annotation of rare and low-frequency variants, use the data to estimate the benefits of sequencing for association studies, and summarize lessons from disease-specific collections. Finally, we make available an extensive resource, including individual-level genetic and phenotypic data and web-based tools to facilitate the exploration of association results.

Indexed as

HealthAdiponectinAllelesCohort StudiesDiseaseExomeFemaleGenetic Predisposition to DiseaseGenetics, MedicalGenetics, PopulationGenetic VariationGenome, HumanGenome-Wide Association StudyGenomicsHumansLipid MetabolismAdiponectinReceptors, LDLTriglycerides

Identifiers

PMID26367797
PMCPMC4773891

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.