Evidence map›Paper›PMID 26367322›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2015

(15)N CSA tensors and (15)N-(1)H dipolar couplings of protein hydrophobic core residues investigated by static solid-state NMR.

Liliya Vugmeyster, Dmitry Ostrovsky, Riqiang Fu

Abstract read
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Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Static solid-stateProgress in nuclear magnetic resonance spectroscopy · 2017
    Review
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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Liliya VugmeysterDepartment of Chemistry, University of Colorado at Denver, 1201 Larimer St, Denver, CO 80204, United States. Electronic address: liliya.vugmeyster@ucdenver.edu.
Dmitry OstrovskyDepartment of Mathematics and Department of Physics, University of Colorado at Denver, 1201 Larimer Street, Denver, CO 80204, United States.
Riqiang FuNational High Field Magnetic Laboratory, 1800 E Paul Dirac Drive, Tallahassee, FL 32310, United States.

Funding

The Administrative CoreP20GM103395 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI BRIAN M BARNES · 2012 to 2026
$66.1M
NIGMS NIH HHS P20 GM103395NIGMS NIH HHS P20GM103395
6 · The paper itself

Abstract

In this work, we assess the usefulness of static (15)N NMR techniques for the determination of the (15)N chemical shift anisotropy (CSA) tensor parameters and (15)N-(1)H dipolar splittings in powder protein samples. By using five single labeled samples of the villin headpiece subdomain protein in a hydrated lyophilized powder state, we determine the backbone (15)N CSA tensors at two temperatures, 22 and -35 °C, in order to get a snapshot of the variability across the residues and as a function of temperature. All sites probed belonged to the hydrophobic core and most of them were part of α-helical regions. The values of the anisotropy (which include the effect of the dynamics) varied between 130 and 156 ppm at 22 °C, while the values of the asymmetry were in the 0.32-0.082 range. The Leu-75 and Leu-61 backbone sites exhibited high mobility based on the values of their temperature-dependent anisotropy parameters. Under the assumption that most differences stem from dynamics, we obtained the values of the motional order parameters for the (15)N backbone sites. While a simple one-dimensional line shape experiment was used for the determination of the (15)N CSA parameters, a more advanced approach based on the "magic sandwich" SAMMY pulse sequence (Nevzorov and Opella, 2003) was employed for the determination of the (15)N-(1)H dipolar patterns, which yielded estimates of the dipolar couplings. Accordingly, the motional order parameters for the dipolar interaction were obtained. It was found that the order parameters from the CSA and dipolar measurements are highly correlated, validating that the variability between the residues is governed by the differences in dynamics. The values of the parameters obtained in this work can serve as reference values for developing more advanced magic-angle spinning recoupling techniques for multiple labeled samples.

Indexed as

AnisotropyLeucineModels, MolecularNitrogen IsotopesNuclear Magnetic Resonance, BiomolecularPeptidesPowdersProtein ConformationProteinsProtein Structure, SecondaryTemperatureLeucineNitrogen IsotopesPeptidesPowdersProteins(15)N CSAProtein dynamicsSAMMYStatic NMR

Identifiers

PMID26367322
PMCPMC4600402

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.