Evidence map›Paper›PMID 26366737›Full record

ArticlePloS one2015

Gene Co-Expression Analysis Inferring the Crosstalk of Ethylene and Gibberellin in Modulating the Transcriptional Acclimation of Cassava Root Growth in Different Seasons.

Treenut Saithong, Samorn Saerue, Saowalak Kalapanulak, Punchapat Sojikul, Jarunya Narangajavana, Sakarindr Bhumiratana

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Treenut SaithongBioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Thakham, Bangkhunthian, Bangkok, Thailand; Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Thakham, Bangkhunthian, Bangkok, Thailand.
Samorn SaerueBioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Thakham, Bangkhunthian, Bangkok, Thailand.
Saowalak KalapanulakBioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Thakham, Bangkhunthian, Bangkok, Thailand; Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Thakham, Bangkhunthian, Bangkok, Thailand.
Punchapat SojikulCenter for Cassava Molecular Biotechnology, Faculty of Science, Mahidol University, Thungphayathai, Ratchathewi, Bangkok, Thailand; Department of Biotechnology, Faculty of Science, Mahidol University, Thungphayathai, Ratchathewi, Bangkok, Thailand.
Jarunya NarangajavanaCenter for Cassava Molecular Biotechnology, Faculty of Science, Mahidol University, Thungphayathai, Ratchathewi, Bangkok, Thailand; Department of Biotechnology, Faculty of Science, Mahidol University, Thungphayathai, Ratchathewi, Bangkok, Thailand.
Sakarindr BhumiratanaSystems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Thakham, Bangkhunthian, Bangkok, Thailand; Department of Chemical Engineering, Faculty of Engineering, King Mongkut's University of Technology Thonburi, Bangkok, Thungkhru, Bangmod, Bangkok, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cassava is a crop of hope for the 21st century. Great advantages of cassava over other crops are not only the capacity of carbohydrates, but it is also an easily grown crop with fast development. As a plant which is highly tolerant to a poor environment, cassava has been believed to own an effective acclimation process, an intelligent mechanism behind its survival and sustainability in a wide range of climates. Herein, we aimed to investigate the transcriptional regulation underlying the adaptive development of a cassava root to different seasonal cultivation climates. Gene co-expression analysis suggests that AP2-EREBP transcription factor (ERF1) orthologue (D142) played a pivotal role in regulating the cellular response to exposing to wet and dry seasons. The ERF shows crosstalk with gibberellin, via ent-Kaurene synthase (D106), in the transcriptional regulatory network that was proposed to modulate the downstream regulatory system through a distinct signaling mechanism. While sulfur assimilation is likely to be a signaling regulation for dry crop growth response, calmodulin-binding protein is responsible for regulation in the wet crop. With our initiative study, we hope that our findings will pave the way towards sustainability of cassava production under various kinds of stress considering the future global climate change.

Indexed as

Gene Expression Regulation, PlantAcclimatizationClimateEthylenesGene Expression ProfilingGibberellinsManihotPlant ProteinsPlant RootsPromoter Regions, GeneticSeasonsSignal TransductionStress, PhysiologicalWaterethyleneEthylenesGibberellinsPlant ProteinsWater

Identifiers

PMID26366737
PMCPMC4569563

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.