Evidence map›Paper›PMID 26366710›Full record

ArticleNature medicine2015

The histone lysine methyltransferase KMT2D sustains a gene expression program that represses B cell lymphoma development.

Ana Ortega-Molina, Isaac W Boss, Andres Canela, Heng Pan, Yanwen Jiang, Chunying Zhao, Man Jiang, Deqing Hu, Xabier Agirre, Itamar Niesvizky and 18 more

Abstract readValidation Study
In one paragraph

Article in Nature medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 274 papers.

0numbers the graph read from it
0cells of the map it votes in
274citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

274 citing papers in PubMed, 440 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Review
  4. Article
  5. Clonal selection of somatic mutations shapes NK cell memory.bioRxiv : the preprint server for biology · 2026
    Article
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  18. The Direction of Modern Therapies in Waldenström Macroglobulinaemia.Journal of cellular and molecular medicine · 2025
    Review
  19. Article
  20. Article

214 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 9 institutions in 3 countries.

Ana Ortega-MolinaCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center (MSKCC), New York, New York, USA.
Isaac W BossDivision of Hematology-Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Andres CanelaLaboratory of Genome Integrity, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Heng PanInstitute for Computational Biomedicine, Weill Cornell Medical College, New York, New York, USA.
Yanwen JiangDivision of Hematology-Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Chunying ZhaoCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center (MSKCC), New York, New York, USA.
Man JiangCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center (MSKCC), New York, New York, USA.
Deqing HuDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois, USA.
Xabier AgirreDivision of Hematology-Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Itamar NiesvizkyDivision of Hematology-Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Ji-Eun LeeLaboratory of Endocrinology and Receptor Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Hua-Tang ChenLaboratory of Genome Integrity, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Daisuke EnnishiCentre for Lymphoid Cancer, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
David W ScottCentre for Lymphoid Cancer, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Anja MottokCentre for Lymphoid Cancer, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Christoffer HotherCentre for Lymphoid Cancer, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Shichong LiuEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Xing-Jun CaoEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Wayne TamDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York, USA.
Rita ShaknovichDivision of Hematology-Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Benjamin A GarciaEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Randy D GascoyneCentre for Lymphoid Cancer, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Kai GeLaboratory of Endocrinology and Receptor Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Ali ShilatifardDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois, USA.
Olivier ElementoInstitute for Computational Biomedicine, Weill Cornell Medical College, New York, New York, USA.
Andre NussenzweigLaboratory of Genome Integrity, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Ari M MelnickDivision of Hematology-Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Hans-Guido WendelCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center (MSKCC), New York, New York, USA.
Cornell University · USBC Cancer Agency · CAMemorial Sloan Kettering Cancer Center · USUniversity of Pennsylvania · USNational Cancer Institute · USNational Institutes of Health · USNorthwestern University · USNational Institute of Diabetes and Digestive and Kidney Diseases · USUniversidad de Navarra · ES

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Regulation of PPARgamma Expression and Adipogenesis by PTIP-Associated FactorsZIADK075003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2009 to 2025
$17.6M
Epigenomic Regulation of PPARgamma and AdipogenesisZIADK075017 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2009 to 2025
$12.4M
The COMPASS family of H3K4 methylases in development and cancerR01CA150265 · NCI · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SHILATIFARD, ALI · 2010 to 2015
$2.9M
The genomic pathogenesis of Follicular LymphomaR01CA190384 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALEK, SAMI NIMER, WENDEL, HANS-GUIDO · 2015 to 2019
$2.7M
Towards The Chemotherapy-Free Treatment of Follicular LymphomaR01CA183876 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WENDEL, HANS-GUIDO · 2014 to 2018
$2.5M
Novel Methodology for Quantitative High-throughput Cancer EpigeneticsDP2OD007447 · OD · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2010 to 2010
$2.4M
Targeting EZH2 in Germinal Center Derived B-Cell LymphomaR01CA187109 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MELNICK, ARI M. · 2014 to 2017
$1.8M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
Intramural NIH HHSNCI NIH HHS 1R01CA19038-01NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA060553NCI NIH HHS R01 CA150265NCI NIH HHS R01CA150265NCI NIH HHS R01 CA183876NCI NIH HHS R01 CA187109NCI NIH HHS R01CA187109NCI NIH HHS R01 CA190384NIGMS NIH HHS R01 GM110174NIGMS NIH HHS R01GM110174NIH HHS DP2 OD007447NIH HHS DP2OD007447Wellcome Trust
6 · The paper itself

Abstract

The gene encoding the lysine-specific histone methyltransferase KMT2D has emerged as one of the most frequently mutated genes in follicular lymphoma and diffuse large B cell lymphoma; however, the biological consequences of KMT2D mutations on lymphoma development are not known. Here we show that KMT2D functions as a bona fide tumor suppressor and that its genetic ablation in B cells promotes lymphoma development in mice. KMT2D deficiency also delays germinal center involution and impedes B cell differentiation and class switch recombination. Integrative genomic analyses indicate that KMT2D affects methylation of lysine 4 on histone H3 (H3K4) and expression of a set of genes, including those in the CD40, JAK-STAT, Toll-like receptor and B cell receptor signaling pathways. Notably, other KMT2D target genes include frequently mutated tumor suppressor genes such as TNFAIP3, SOCS3 and TNFRSF14. Therefore, KMT2D mutations may promote malignant outgrowth by perturbing the expression of tumor suppressor genes that control B cell-activating pathways.

Indexed as

AnimalsB-LymphocytesDNA-Binding ProteinsGene Expression RegulationHumansLymphoma, B-CellMiceMice, KnockoutMutationNeoplasm ProteinsDNA-Binding ProteinsKMT2D protein, humanNeoplasm Proteins

Identifiers

PMID26366710
PMCPMC4676270
OpenAlexW2214176334

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.