Evidence map›Paper›PMID 26366667›Full record

Trial reportMutation research2015

Positive selection of AS3MT to arsenic water in Andean populations.

Christina A Eichstaedt, Tiago Antao, Alexia Cardona, Luca Pagani, Toomas Kivisild, Maru Mormina

Abstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Mutation research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Comparing signals of natural selection between three Indigenous North American populations.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Article
  12. Adaptive capabilities and fitness consequences associated with pollution exposure in fish.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christina A EichstaedtDivision of Biological Anthropology, University of Cambridge, Cambridge CB2 1QH, Cambridgeshire, UK; Center for Pulmonary Hypertension, Thoraxclinic at the University Hospital Heidelberg, 69126 Heidelberg, Baden-Württemberg, Germany. Electronic address: Christina.Eichstaedt@med.uni-heidelberg.de.
Tiago AntaoDepartment of Vector Biology, Liverpool School of Tropical Medicine, Liverpool L3 5QA, Lancashire, UK.
Alexia CardonaDivision of Biological Anthropology, University of Cambridge, Cambridge CB2 1QH, Cambridgeshire, UK.
Luca PaganiDivision of Biological Anthropology, University of Cambridge, Cambridge CB2 1QH, Cambridgeshire, UK; Wellcome Trust Sanger Institute, Hinxton CB10 1SA, Cambridgeshire, UK.
Toomas KivisildDivision of Biological Anthropology, University of Cambridge, Cambridge CB2 1QH, Cambridgeshire, UK.
Maru MorminaDivision of Biological Anthropology, University of Cambridge, Cambridge CB2 1QH, Cambridgeshire, UK; Faculty of Humanities and Social Sciences, University of Winchester, Winchester SO22 4NR, Hampshire, UK. Electronic address: Maru.Mormina@winchester.ac.uk.

Funding

European Research Council 261213Wellcome Trust
6 · The paper itself

Abstract

Arsenic is a carcinogen associated with skin lesions and cardiovascular diseases. The Colla population from the Puna region in Northwest Argentinean is exposed to levels of arsenic in drinking water exceeding the recommended maximum by a factor of 20. Yet, they thrive in this challenging environment since thousands of years and therefore we hypothesize strong selection signatures in genes involved in arsenic metabolism. We analyzed genome-wide genotype data for 730,000 loci in 25 Collas, considering 24 individuals of the neighbouring Calchaquíes and 24 Wichí from the Gran Chaco region in the Argentine province of Salta as control groups. We identified a strong signal of positive selection in the main arsenic methyltransferase AS3MT gene, which has been previously associated with lower concentrations of the most toxic product of arsenic metabolism monomethylarsonic acid. This study confirms recent studies reporting selection signals in the AS3MT gene albeit using different samples, tests and control populations.

Indexed as

Selection, GeneticAdultArgentinaArsenicArsenicalsFemaleGenome-Wide Association StudyHumansIndians, South AmericanMaleMethyltransferasesWater Pollutants, ChemicalArsenicArsenicalsAS3MT protein, humanMethyltransferasesmonomethylarsonic acidWater Pollutants, ChemicalArsenic drinking waterCalchaquíesCollasMethyltransferasePuna

Identifiers

PMID26366667
PMCPMC4896383

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.