Evidence map›Paper›PMID 26366556›Full record

ArticlePloS one2015

Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles.

Martin Převorovský, Martina Oravcová, Jarmila Tvarůžková, Róbert Zach, Petr Folk, František Půta, Jürg Bähler

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Martin PřevorovskýResearch Department of Genetics, Evolution & Environment and UCL Cancer Institute, University College London, London, United Kingdom; Department of Cell Biology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
Martina OravcováDepartment of Cell Biology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
Jarmila TvarůžkováDepartment of Cell Biology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
Róbert ZachDepartment of Cell Biology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
Petr FolkDepartment of Cell Biology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
František PůtaDepartment of Cell Biology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
Jürg BählerResearch Department of Genetics, Evolution & Environment and UCL Cancer Institute, University College London, London, United Kingdom.
Charles University · CZUniversity College London · GB

Funding

Wellcome Trust 095598Wellcome Trust 095598/Z/11/Z
6 · The paper itself

Abstract

backgroundCbf11 and Cbf12, the fission yeast CSL transcription factors, have been implicated in the regulation of cell-cycle progression, but no specific roles have been described and their target genes have been only partially mapped. METHODOLOGY/PRINCIPAL

findingsUsing a combination of transcriptome profiling under various conditions and genome-wide analysis of CSL-DNA interactions, we identify genes regulated directly and indirectly by CSL proteins in fission yeast. We show that the expression of stress-response genes and genes that are expressed periodically during the cell cycle is deregulated upon genetic manipulation of cbf11 and/or cbf12. Accordingly, the coordination of mitosis and cytokinesis is perturbed in cells with genetically manipulated CSL protein levels, together with other specific defects in cell-cycle progression. Cbf11 activity is nutrient-dependent and Δcbf11-associated defects are mitigated by inactivation of the protein kinase A (Pka1) and stress-activated MAP kinase (Sty1p38) pathways. Furthermore, Cbf11 directly regulates a set of lipid metabolism genes and Δcbf11 cells feature a stark decrease in the number of storage lipid droplets. CONCLUSIONS/SIGNIFICANCE: Our results provide a framework for a more detailed understanding of the role of CSL proteins in the regulation of cell-cycle progression in fission yeast.

Indexed as

Cyclic AMP-Dependent Protein KinasesCytokinesisGene Expression ProfilingGene Expression Regulation, FungalMitogen-Activated Protein KinasesMitosisSchizosaccharomycesSchizosaccharomyces pombe ProteinsStress, PhysiologicalTranscription FactorsCbf11 protein, S pombeCbf12 protein, S pombeCyclic AMP-Dependent Protein KinasesMitogen-Activated Protein KinasesSchizosaccharomyces pombe Proteinssty1 protein, S pombeTranscription Factors

Identifiers

PMID26366556
PMCPMC4569565
OpenAlexW2337718433

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.