Evidence map›Paper›PMID 26366553›Full record

ArticleNature genetics2015

Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.

Fabrice Danjou, Magdalena Zoledziewska, Carlo Sidore, Maristella Steri, Fabio Busonero, Andrea Maschio, Antonella Mulas, Lucia Perseu, Susanna Barella, Eleonora Porcu and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 2 pooled it
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 2 syntheses or guidelines pooled it, 79 citations in OpenAlex.

  1. Pooled it
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  16. Genetic Variation among Pharmacogenes in the Sardinian Population.International journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 3 countries.

Fabrice DanjouIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.ORCID http://orcid.org/0000-0002-4976-2327
Magdalena ZoledziewskaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Carlo SidoreIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Maristella SteriIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Fabio BusoneroIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Andrea MaschioIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Antonella MulasIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Lucia PerseuIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Susanna BarellaOspedale Regionale per le Microcitemie, ASL8, Cagliari, Italy.
Eleonora PorcuIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Giorgio PistisIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Maristella PitzalisIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Mauro PalaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Stephan MenzelDepartment of Molecular Hematology, King's College London, London, UK.
Sarah MetrustryDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK.
Timothy D SpectorDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK.
Lidia LeoniCenter for Advanced Studies, Research and Development in Sardinia (CRS4), Parco Scientifico e Tecnologico della Sardegna, Pula, Italy.
Andrea AngiusIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Manuela UdaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Paolo MoiOspedale Regionale per le Microcitemie, ASL8, Cagliari, Italy.
Swee Lay TheinDepartment of Molecular Hematology, King's College London, London, UK.
Renzo GalanelloOspedale Regionale per le Microcitemie, ASL8, Cagliari, Italy.
Gonçalo R AbecasisCenter for Statistical Genetics, University of Michigan, Ann Arbor, Michigan, USA.
David SchlessingerLaboratory of Genetics, National Institute on Aging, US National Institutes of Health, Baltimore, Maryland, USA.
Serena SannaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Francesco CuccaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Institute of Genetic and Biomedical Research · ITUniversity of Sassari · ITKing's College London · GBUniversity of Michigan · USCenter for Advanced Studies Research and Development in Sardinia · ITUniversity of Cagliari · ITNational Institutes of Health · USOspedale Microcitemico · IT

Funding

Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaU01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2017 to 2018
$6.3M
Aging-related Traits and Disease Risk Factors in a Sardinian Population CohortZIAAG000675 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2021
$5.7M
Robust Software Tools for Variant Identification and Functional AssessmentU01HG006513 · NHGRI · UNIVERSITY OF UTAH · PI ABECASIS, GONCALO, MARTH, GABOR T · 2012 to 2015
$4.2M
Genetics of Lipid Levels: Draft Sequencing of 1000 GenomesRC2HG005581 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2009 to 2010
$4.0M
Computational and statistical models for human geneticsR01HG007022 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2012 to 2016
$3.0M
Modular Software for Sequence Data Quality Checking Alignment & Variant-CallingRC2HG005552 · NHGRI · BOSTON COLLEGE · PI ABECASIS, GONCALO, MARTH, GABOR T · 2009 to 2012
$2.4M
Intramural NIH HHSMedical Research Council G0000111NHGRI NIH HHS HG005552NHGRI NIH HHS HG005581NHGRI NIH HHS HG006513NHGRI NIH HHS HG007022NHGRI NIH HHS R01 HG007022NHGRI NIH HHS RC2 HG005552NHGRI NIH HHS RC2 HG005581NHGRI NIH HHS U01 HG006513NHLBI NIH HHS HL117626NHLBI NIH HHS R01 HL117626NHLBI NIH HHS U01 HL117626NIA NIH HHS N01-AG-1-2109NIDA NIH HHS HHSN271201100005CWellcome Trust
6 · The paper itself

Abstract

We report genome-wide association study results for the levels of A1, A2 and fetal hemoglobins, analyzed for the first time concurrently. Integrating high-density array genotyping and whole-genome sequencing in a large general population cohort from Sardinia, we detected 23 associations at 10 loci. Five signals are due to variants at previously undetected loci: MPHOSPH9, PLTP-PCIF1, ZFPM1 (FOG1), NFIX and CCND3. Among the signals at known loci, ten are new lead variants and four are new independent signals. Half of all variants also showed pleiotropic associations with different hemoglobins, which further corroborated some of the detected associations and identified features of coordinated hemoglobin species production.

Indexed as

Adultalpha-Globinsbeta-GlobinsFemaleGenetic VariationGenome, HumanGenome-Wide Association StudyGenotypeGenotyping TechniquesHemoglobinsHumansIslandsItalyMaleMiddle AgedMultigene Familyalpha-Globinsbeta-GlobinsHemoglobins

Identifiers

PMID26366553
PMCPMC4627580
OpenAlexW1828925999

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.