Evidence map›Paper›PMID 26366408›Full record

ArticleInternational journal of genomics2015

The Major Prognostic Features of Nuclear Receptor NR5A2 in Infiltrating Ductal Breast Carcinomas.

Li-Yun Chang, Li-Yu D Liu, Don A Roth, Wen-Hung Kuo, Hsiao-Lin Hwa, King-Jen Chang, Fon-Jou Hsieh

Open access · goldAbstract read
In one paragraph

Article in International journal of genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Li-Yun ChangDepartment of Obstetrics and Gynecology, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Li-Yu D LiuBiometry Division, Department of Agronomy, National Taiwan University, Taipei 106, Taiwan.
Don A RothDepartment of Molecular Biology, University of Wyoming, Laramie, WY 82071, USA.
Wen-Hung KuoDepartment of Surgery, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
Hsiao-Lin HwaDepartment of Obstetrics and Gynecology, College of Medicine, National Taiwan University, Taipei 100, Taiwan.
King-Jen ChangDepartment of Surgery, College of Medicine, National Taiwan University, Taipei 100, Taiwan ; Cheng Ching General Hospital, Taichung 400, Taiwan.
Fon-Jou HsiehDepartment of Obstetrics and Gynecology, College of Medicine, National Taiwan University, Taipei 100, Taiwan ; Research Center for Developmental Biology and Regenerative Medicine, National Taiwan University, Taipei 100, Taiwan.
National Taiwan University · TWUniversity of Wyoming · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background. Gene expression profiles of 181 breast cancer samples were analyzed to identify prognostic features of nuclear receptors NR5A1 and NR5A2 based upon their associated transcriptional networks. Methods. A supervised network analysis approach was used to build the NR5A-mediated transcriptional regulatory network. Other bioinformatic tools and statistical methods were utilized to confirm and extend results from the network analysis methodology. Results. NR5A2 expression is a negative factor in breast cancer prognosis in both ER(-) and ER(-)/ER(+) mixed cohorts. The clinical and cohort significance of NR5A2-mediated transcriptional activities indicates that it may have a significant role in attenuating grade development and cancer related signal transduction pathways. NR5A2 signature that conditions poor prognosis was identified based upon results from 15 distinct probes. Alternatively, the expression of NR5A1 predicts favorable prognosis when concurrent NR5A2 expression is low. A favorable signature of eight transcription factors mediated by NR5A1 was also identified. Conclusions. Correlation of poor prognosis and NR5A2 activity is identified by NR5A2-mediated 15-gene signature. NR5A2 may be a potential drug target for treating a subset of breast cancer tumors across breast cancer subtypes, especially ER(-) breast tumors. The favorable prognostic feature of NR5A1 is predicted by NR5A1-mediated 8-gene signature.

Identifiers

PMID26366408
PMCPMC4561099
OpenAlexW1622985958

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.