Evidence map›Paper›PMID 26365522›Full record

ArticleScientific reports2015

Amino Acid Polymorphisms in Hepatitis C Virus Core Affect Infectious Virus Production and Major Histocompatibility Complex Class I Molecule Expression.

Megumi Tasaka-Fujita, Nao Sugiyama, Wonseok Kang, Takahiro Masaki, Takahiro Masaski, Asako Murayama, Norie Yamada, Ryuichi Sugiyama, Senko Tsukuda, Koichi Watashi and 5 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Megumi Tasaka-FujitaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Nao SugiyamaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Wonseok KangLaboratory of Immunology and Infectious Diseases, Graduate School of Medical Science and Engineering, KAIST, Daejeon 305-701, Korea.
Takahiro MasakiDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Takahiro Masaski
Asako MurayamaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Norie YamadaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Ryuichi SugiyamaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Senko TsukudaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Koichi WatashiDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Yasuhiro AsahinaDepartment of Gastroenterology and Hepatology, Tokyo Medical and Dental University, Tokyo 113-8519, Japan.
Naoya SakamotoDepartment of Gastroenterology and Hepatology, Hokkaido University Graduate School of Medicine, Sapporo 060-8638, Japan.
Takaji WakitaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Eui-Cheol ShinLaboratory of Immunology and Infectious Diseases, Graduate School of Medical Science and Engineering, KAIST, Daejeon 305-701, Korea.
Takanobu KatoDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
National Institute of Infectious Diseases · JPKorea Advanced Institute of Science and Technology · KRHokkaido University · JPTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amino acid (aa) polymorphisms in the hepatitis C virus (HCV) genotype 1b core protein have been reported to be a potent predictor for poor response to interferon (IFN)-based therapy and a risk factor for hepatocarcinogenesis. We investigated the effects of these polymorphisms with genotype 1b/2a chimeric viruses that contained polymorphisms of Arg/Gln at aa 70 and Leu/Met at aa 91. We found that infectious virus production was reduced in cells transfected with chimeric virus RNA that had Gln at aa 70 (aa70Q) compared with RNA with Arg at aa 70 (aa70R). Using flow cytometry analysis, we confirmed that HCV core protein accumulated in aa70Q clone transfected cells, and it caused a reduction in cell-surface expression of major histocompatibility complex (MHC) class I molecules induced by IFN treatment through enhanced protein kinase R phosphorylation. We could not detect any effects due to the polymorphism at aa 91. In conclusion, the polymorphism at aa 70 was associated with efficiency of infectious virus production, and this deteriorated virus production in strains with aa70Q resulted in the intracellular accumulation of HCV proteins and attenuation of MHC class I molecule expression. These observations may explain the strain-associated resistance to IFN-based therapy and hepatocarcinogenesis of HCV.

Indexed as

Antiviral AgentsCell LineeIF-2 KinaseGenotypeHepacivirusHistocompatibility Antigens Class IHumansInterferon-alphaMutagenesis, Site-DirectedPhenotypePhosphorylationViral Core ProteinsVirus ReplicationAntiviral AgentseIF-2 KinaseHistocompatibility Antigens Class IInterferon-alphanucleocapsid protein, Hepatitis C virusViral Core Proteins

Identifiers

PMID26365522
PMCPMC4568458
OpenAlexW2214826689

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.