Evidence map›Paper›PMID 26365379›Full record

ArticleMolecular cell2015

The Replication Checkpoint Prevents Two Types of Fork Collapse without Regulating Replisome Stability.

Huzefa Dungrawala, Kristie L Rose, Kamakoti P Bhat, Kareem N Mohni, Gloria G Glick, Frank B Couch, David Cortez

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 258 papers.

0numbers the graph read from it
0cells of the map it votes in
258citing papers in PubMed
16.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

258 citing papers in PubMed, 376 citations in OpenAlex.

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198 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Huzefa DungrawalaDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Kristie L RoseDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA; Mass Spectrometry Research Center, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Kamakoti P BhatDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Kareem N MohniDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Gloria G GlickDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Frank B CouchDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
David CortezDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA. Electronic address: david.cortez@vanderbilt.edu.
Vanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
TISSUE CoreP50CA098131 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO, PIETENPOL, JENNIFER A · 2003 to 2024
$48.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Analysis of the Replication Stress ResponseR01GM116616 · NIGMS · VANDERBILT UNIVERSITY · PI David K Cortez · 2015 to 2026
$5.4M
Function of the ATR-ATRIP ComplexR01CA102729 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2003 to 2018
$4.2M
Mechanisms of DNA replication and repairR21ES022319 · NIEHS · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2013 to 2014
$427k
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1TR000445NCI NIH HHS P30 CA068485NCI NIH HHS P30CA068485NCI NIH HHS P50 CA098131NCI NIH HHS R01 CA102729NCI NIH HHS R01CA102729NCI NIH HHS T32 CA009582NIEHS NIH HHS R21 ES022319NIGMS NIH HHS R01 GM116616
6 · The paper itself

Abstract

The ATR replication checkpoint ensures that stalled forks remain stable when replisome movement is impeded. Using an improved iPOND protocol combined with SILAC mass spectrometry, we characterized human replisome dynamics in response to fork stalling. Our data provide a quantitative picture of the replisome and replication stress response proteomes in 32 experimental conditions. Importantly, rather than stabilize the replisome, the checkpoint prevents two distinct types of fork collapse. Unsupervised hierarchical clustering of protein abundance on nascent DNA is sufficient to identify protein complexes and place newly identified replisome-associated proteins into functional pathways. As an example, we demonstrate that ZNF644 complexes with the G9a/GLP methyltransferase at replication forks and is needed to prevent replication-associated DNA damage. Our data reveal how the replication checkpoint preserves genome integrity, provide insights into the mechanism of action of ATR inhibitors, and will be a useful resource for replication, DNA repair, and chromatin investigators.

Indexed as

DNA ReplicationS Phase Cell Cycle CheckpointsAtaxia Telangiectasia Mutated ProteinsCell Line, TumorDeoxyribonucleasesDNA DamageDNA-Directed DNA PolymeraseDNA HelicasesDNA Repair EnzymesEnzyme StabilityHEK293 CellsHumansTranscription FactorsAtaxia Telangiectasia Mutated ProteinsATR protein, humanDeoxyribonucleasesDNA-Directed DNA PolymeraseDNA HelicasesDNA Repair EnzymesTranscription FactorsZNF644 protein, human

Identifiers

PMID26365379
PMCPMC4575883
OpenAlexW1808263692

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.