Evidence map›Paper›PMID 26364852›Full record

ArticleThe Journal of biological chemistry2015

Cystatin D locates in the nucleus at sites of active transcription and modulates gene and protein expression.

Gemma Ferrer-Mayorga, Silvia Alvarez-Díaz, Noelia Valle, Javier De Las Rivas, Marta Mendes, Rodrigo Barderas, Francesc Canals, Olga Tapia, J Ignacio Casal, Miguel Lafarga and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

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  5. Exploring upstream and downstream causality of inflammatory cytokines in intervertebral disc degeneration: a bidirectional, two-sample Mendelian randomization study.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 1 country.

Gemma Ferrer-MayorgaFrom the Instituto de Investigaciones Biomédicas "Alberto Sols," Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid, E-28029 Madrid.
Silvia Alvarez-DíazFrom the Instituto de Investigaciones Biomédicas "Alberto Sols," Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid, E-28029 Madrid.
Noelia ValleFrom the Instituto de Investigaciones Biomédicas "Alberto Sols," Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid, E-28029 Madrid.
Javier De Las Rivasthe Centro de Investigación del Cáncer, Consejo Superior de Investigaciones Científicas-Universidad de Salamanca, E-37007 Salamanca.
Marta Mendesthe Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, E-28040 Madrid.
Rodrigo Barderasthe Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, E-28040 Madrid.
Francesc Canalsthe Proteomics Laboratory, Vall d'Hebron Institute of Oncology, Vall d'Hebron University Hospital, Barcelona, E-08035, and.
Olga Tapiathe Departamento de Anatomía y Biología Celular, Facultad de Medicina, Universidad de Cantabria-Instituto de Investigación Valdecilla, E-39011 Santander, Spain.
J Ignacio Casalthe Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, E-28040 Madrid.
Miguel Lafargathe Departamento de Anatomía y Biología Celular, Facultad de Medicina, Universidad de Cantabria-Instituto de Investigación Valdecilla, E-39011 Santander, Spain.
Alberto MuñozFrom the Instituto de Investigaciones Biomédicas "Alberto Sols," Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid, E-28029 Madrid, amunoz@iib.uam.es.
Consejo Superior de Investigaciones Científicas · ESCentro de Investigaciones Biológicas Margarita Salas · ESInstituto de Investigaciones Biomédicas Sols-Morreale · ESMarqués de Valdecilla University Hospital · ESUniversidad de Cantabria · ESUniversidad de Salamanca · ESVall d'Hebron Institute of Oncology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cystatin D is an inhibitor of lysosomal and secreted cysteine proteases. Strikingly, cystatin D has been found to inhibit proliferation, migration, and invasion of colon carcinoma cells indicating tumor suppressor activity that is unrelated to protease inhibition. Here, we demonstrate that a proportion of cystatin D locates within the cell nucleus at specific transcriptionally active chromatin sites. Consistently, transcriptomic analysis show that cystatin D alters gene expression, including that of genes encoding transcription factors such as RUNX1, RUNX2, and MEF2C in HCT116 cells. In concordance with transcriptomic data, quantitative proteomic analysis identified 292 proteins differentially expressed in cystatin D-expressing cells involved in cell adhesion, cytoskeleton, and RNA synthesis and processing. Furthermore, using cytokine arrays we found that cystatin D reduces the secretion of several protumor cytokines such as fibroblast growth factor-4, CX3CL1/fractalkine, neurotrophin 4 oncostatin-M, pulmonary and activation-regulated chemokine/CCL18, and transforming growth factor B3. These results support an unanticipated role of cystatin D in the cell nucleus, controlling the transcription of specific genes involved in crucial cellular functions, which may mediate its protective action in colon cancer.

Indexed as

Gene Expression Regulation, NeoplasticTranscription, GeneticCell Line, TumorColonic NeoplasmsCore Binding Factor Alpha 1 SubunitCore Binding Factor Alpha 2 SubunitCystatinsCytokinesHumansMEF2 Transcription FactorsNeoplasm ProteinsProteomicsCore Binding Factor Alpha 1 SubunitCore Binding Factor Alpha 2 SubunitCST5 protein, humanCystatinsCytokinesMEF2C protein, humanMEF2 Transcription FactorsNeoplasm ProteinsRUNX1 protein, humanRUNX2 protein, humancolon cancercysteine proteasecytokinegene expressionprotease inhibitor

Identifiers

PMID26364852
PMCPMC4646312
OpenAlexW2241732822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.