Evidence map›Paper›PMID 26363785›Full record

ArticleBiological research2015

Colorectal cancer DNA methylation patterns from patients in Manaus, Brazil.

Fabiana Greyce Oliveira Almeida, Priscila Ferreira de Aquino, Afonso Duarte Leão de Souza, Antonia Queiroz Lima de Souza, Sonia do Carmo Vinhote, Thaís Messias Mac-Cormick, Marcelo Soares da Mota Silva, Sidney Raimundo Silva Chalub, Juliana de Saldanha da Gama Fischer, Paulo Costa Carvalho and 1 more

Abstract read
In one paragraph

Article in Biological research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Fabiana Greyce Oliveira AlmeidaLaboratory of Chromatography and Mass Spectrometry, Institute of Exact Sciences, Federal University of Amazonas, Manaus, Brazil. fabiana_greyce@hotmail.com.
Priscila Ferreira de AquinoLeonidas and Maria Deane Institute, FIOCRUZ, Manaus, Brazil. priscila_aquino23@hotmail.com.
Afonso Duarte Leão de SouzaLaboratory of Chromatography and Mass Spectrometry, Institute of Exact Sciences, Federal University of Amazonas, Manaus, Brazil. souzaadl@hotmail.com.
Antonia Queiroz Lima de SouzaLaboratory of Chromatography and Mass Spectrometry, Institute of Exact Sciences, Federal University of Amazonas, Manaus, Brazil. antoniaqlsouza@yahoo.com.br.
Sonia do Carmo VinhoteHigh School of Health, Amazon State University, Manaus, Brazil. vinhotesonia@gmail.com.
Thaís Messias Mac-CormickLaboratory of Molecular Pathology, Department of Pathology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil. maccormick.thais@gmail.com.
Marcelo Soares da Mota SilvaLaboratory of Molecular Pathology, Department of Pathology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil. marcelosoaresdamota@gmail.com.
Sidney Raimundo Silva ChalubDepartment of Abdominal Surgery, Oncology Control Center Foundation of Amazon State, Manaus, Brazil. sidney.chalub@hotmail.com.
Juliana de Saldanha da Gama FischerLaboratory of Proteomics and Protein Engineering, Carlos Chagas Institute, Curitiba, Brazil. juli_f@yahoo.com.
Paulo Costa CarvalhoLaboratory of Proteomics and Protein Engineering, Carlos Chagas Institute, Curitiba, Brazil. paulo@pcarvalho.com.
Maria da Gloria da Costa CarvalhoLaboratory of Molecular Pathology, Department of Pathology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil. gloria@gcarvalho.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDNA methylation is commonly linked with the silencing of the gene expression for many tumor suppressor genes. As such, determining DNA methylation patterns should aid, in times to come, in the diagnosis and personal treatment for various types of cancers. Here, we analyzed the methylation pattern from five colorectal cancer patients from the Amazon state in Brazil for four tumor suppressor genes, viz.: DAPK, CDH1, CDKN2A, and TIMP2 by employing a polymerase chain reaction (PCR) specific to methylation. Efforts in the study of colorectal cancer are fundamental as it is the third most of highest incidence in the world.

resultsTumor biopsies were methylated in 1/5 (20%), 2/5 (40%), 4/5 (80%), and 4/5 (80%) for CDH1, CDKN2A, DAPK, and TIMP2 genes, respectively. The margin biopsies were methylated in 3/7 (43%), 2/7 (28%), 7/7 (100%), and 6/7 (86%) for CDH1, CDKN2A, DAPK, and TIMP2, respectively.

conclusionsOur findings showed DAPK and TIMP2 to be methylated in most samples from both tumor tissues and adjacent non-neoplastic margins; thus presenting distinct methylation patterns. This emphasizes the importance of better understanding of the relation of these patterns with cancer in the context of different populations.

Indexed as

Genes, Tumor SuppressorAdultAgedBrazilColorectal NeoplasmsDNA MethylationFemaleGene SilencingHumansMaleMiddle AgedPolymerase Chain ReactionPromoter Regions, Genetic

Identifiers

PMID26363785
PMCPMC4567825

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.