Evidence map›Paper›PMID 26363098›Full record

ArticleJournal of proteomics2016

Growth phase-dependent composition of the Helicobacter pylori exoproteome.

Christina A Snider, Bradley J Voss, W Hayes McDonald, Timothy L Cover

Open access · greenAbstract read
In one paragraph

Article in Journal of proteomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. Beyond the Stomach: Exploring the Role ofExpert reviews in molecular medicine · 2026
    Review
  2. Characterization ofFrontiers in microbiology · 2026
    Article
  3. Review
  4. Effect ofJournal of oral microbiology · 2025
    Article
  5. Fatty acids ofMicrobiology spectrum · 2024
    Article
  6. International journal of biological sciences · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Gut microbes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christina A SniderDepartment of Medicine, Nashville, TN, USA.
Bradley J VossDepartment of Pathology, Microbiology and Immunology, Nashville, TN, USA.
W Hayes McDonaldProteomics Laboratory, Mass Spectrometry Research Center, Nashville, TN, USA; Department of Biochemistry, Nashville, TN, USA.
Timothy L CoverDepartment of Medicine, Nashville, TN, USA; Department of Pathology, Microbiology and Immunology, Nashville, TN, USA; Vanderbilt University School of Medicine, Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN, USA. Electronic address: timothy.l.cover@vanderbilt.edu.
University School of Nashville · USVanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Role of Iron and B-Catenin Activation in Gastric CarcinogenesisP01CA116087 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Kevin L Schey · 2009 to 2026
$27.5M
Structure-function analysis of H. pylori VacAR01AI039657 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI TIMOTHY L COVER · 1996 to 2026
$8.3M
Pathogenesis of Helicobacter pylori infectionI01BX000627 · VA · VETERANS HEALTH ADMINISTRATION · PI COVER, TIMOTHY L · 2011 to 2018
–
BLRD VA I01 BX000627NCI NIH HHS CA116087NCI NIH HHS P01 CA116087NCI NIH HHS P30 CA068485NIAID NIH HHS NIH AI039657NIAID NIH HHS R01 AI039657NIDDK NIH HHS P30 DK058404NIDDK NIH HHS P30DK058404
6 · The paper itself

Abstract

Helicobacter pylori colonizes the human stomach and is associated with an increased risk of gastric cancer and peptic ulcer disease. Analysis of H. pylori protein secretion is complicated by the occurrence of bacterial autolysis. In this study, we analyzed the exoproteome of H. pylori at multiple phases of bacterial growth and identified 74 proteins that are selectively released into the extracellular space. These include proteins known to cause alterations in host cells, antigenic proteins, and additional proteins that have not yet been studied in any detail. The composition of the H. pylori exoproteome is dependent on the phase of bacterial growth. For example, the proportional abundance of the vacuolating toxin VacA in culture supernatant is higher during late growth phases than early growth phases, whereas the proportional abundance of many other proteins is higher during early growth phases. We detected marked variation in the subcellular localization of putative secreted proteins within soluble and membrane fractions derived from intact bacteria. By providing a comprehensive view of the H. pylori exoproteome, these results provide new insights into the array of secreted H. pylori proteins that may cause alterations in the gastric environment.

Indexed as

Bacterial ProteinsCluster AnalysisGastritisGene Expression Regulation, BacterialHelicobacter InfectionsHelicobacter pyloriHumansMass SpectrometryProtein Sorting SignalsProteomeProteomicsSolubilityStomachBacterial ProteinsProtein Sorting SignalsProteomeVacA protein, Helicobacter pyloriAutolysisAutotransporterBacterial protein secretionExoproteomeGastric cancerMass spectrometryOuter membrane vesiclesPeptic ulcer diseaseProteomicsSecretomeVacA

Identifiers

PMID26363098
PMCPMC4640983
OpenAlexW1876681790

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.