Evidence map›Paper›PMID 26362956›Full record

ArticleThe Kaohsiung journal of medical sciences2015

Risk group characteristics and viral transmission clusters in South-East Asian patients infected with human immunodeficiency virus-1 (HIV-1) circulating recombinant form (CRF) 01_AE and subtype B.

Rebecca A Oyomopito, Yen-Ju Chen, Somnuek Sungkanuparph, Rami Kantor, Tuti Merati, Wing-Cheong Yam, Thira Sirisanthana, Patrick C K Li, Pacharee Kantipong, Praphan Phanuphak and 7 more

Open access · goldAbstract read
In one paragraph

Article in The Kaohsiung journal of medical sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 9 countries.

Rebecca A OyomopitoThe Kirby Institute, University of New South Wales, Sydney, Australia.
Yen-Ju ChenCenter for Infectious Disease and Cancer Research, Kaohsiung Medical University, Kaohsiung City, Taiwan.
Somnuek SungkanuparphFaculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Rami KantorDivision of Infectious Diseases, Brown University Alpert Medical School, RI, USA.
Tuti MeratiFaculty of Medicine Udayana University & Sanglah Hospital, Bali, Indonesia.
Wing-Cheong YamDepartment of Microbiology, Queen Mary Hospital, Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
Thira SirisanthanaResearch Institute for Health Sciences, Chiang Mai University, Chiang Mai, Thailand.
Patrick C K LiDepartment of Microbiology, Queen Mary Hospital, Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
Pacharee KantipongChiangrai Prachanukroh Hospital, Chiangrai, Thailand.
Praphan PhanuphakHIV-NAT/Thai Red Cross AIDS Research Centre, Bangkok, Thailand.
Chris K C LeeHospital Sungai Buloh, Sungai Buloh, Malaysia.
Adeeba KamarulzamanUniversity Malaya Medical Centre, Kuala Lumpur, Malaysia.
Rossana DitangcoResearch Institute for Tropical Medicine, Manila, Philippines.
Szu-Wei HuangCenter for Infectious Disease and Cancer Research, Kaohsiung Medical University, Kaohsiung City, Taiwan.
Annette H SohnTREAT Asia, amfAR-The Foundation for AIDS Research, Bangkok, Thailand.
Matthew LawThe Kirby Institute, University of New South Wales, Sydney, Australia.
Yi Ming A ChenCenter for Infectious Disease and Cancer Research, Kaohsiung Medical University, Kaohsiung City, Taiwan; Department of Microbiology, Kaohsiung Medical University, Kaohsiung City, Taiwan. Electronic address: arthur@kmu.edu.tw.
Kaohsiung Medical University · TWQueen Mary Hospital · CNUdayana University · IDUniversity Malaya Medical Centre · MYUNSW Sydney · AUChiangRai Prachanukroh Hospital · THHIV Netherlands Australia Thailand Research Collaboration · THMahidol University · TH

Funding

The Asia-Pacific HIV Research CollaborationU01AI069907 · NIAID · FOUNDATION FOR AIDS RESEARCH · PI ANNETTE H SOHN · 2006 to 2026
$44.8M
NIAID NIH HHS U01 AI069907NIAID NIH HHS U01AI069907
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV)-1 epidemics in Asian countries are driven by varying exposures. The epidemiology of the regional pandemic has been changing with the spread of HIV-1 to lower-risk populations through sexual transmission. Common HIV-1 genotypes include subtype B and circulating recombinant form (CRF) 01_AE. Our objective was to use HIV-1 genotypic data to better quantify local epidemics. TASER-M is a multicenter prospective cohort of HIV-infected patients. Associations between HIV exposure, patient sex, country of sample origin and HIV-1 genotype were evaluated by multivariate logistic regression. Phylogenetic methods were used on genotypic data to investigate transmission relationships. A total of 1086 patients from Thailand, Hong Kong, Malaysia and the Philippines were included in analyses. Proportions of male patients within countries varied (Thailand: 55.6%, Hong Kong: 86.1%, Malaysia: 81.4%, Philippines: 93.8%; p < 0.001) as did HIV exposures (heterosexual contact: Thailand: 85.7%, Hong Kong, 46.2%, Malaysia: 47.8%, Philippines: 25.0%; p < 0.001). After adjustment, we found increased subtype B infection among men who have sex with men, relative to heterosexual-reported exposures (odds ratio = 2.4, p < 0.001). We further describe four transmission clusters of eight to 15 treatment naïve, predominantly symptomatic patients (two each for subtype B and CRF01_AE). Risk-group subpopulations differed with respect to the infecting HIV-1 genotype. Homosexual exposure patients had higher odds of being infected with subtype B. Where HIV-1 genotypes circulate within countries or patient risk-groups, local monitoring of genotype-specific transmissions may play a role in focusing public health prevention strategies. Phylogenetic evaluations provide complementary information for surveillance and monitoring of viruses with high mutation rates such as HIV-1 and Ebola.

Indexed as

AdultAsia, SoutheasternFemaleHIV-1HIV InfectionsHumansMalePhylogenyRisk FactorsAsiaCRF01_AEHIV exposureSubtype B

Identifiers

PMID26362956
PMCPMC4929356
OpenAlexW1853618201

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.