Evidence map›Paper›PMID 26362317›Full record

ArticleMolecular & cellular proteomics : MCP2016

Comprehensive Assessment of Oxidatively Induced Modifications of DNA in a Rat Model of Human Wilson's Disease.

Yang Yu, Candace R Guerrero, Shuo Liu, Nicholas J Amato, Yogeshwar Sharma, Sanjeev Gupta, Yinsheng Wang

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Xeroderma Pigmentosum: A Model for Human Premature Aging.The Journal of investigative dermatology · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Chemical Analysis of DNA Damage.Analytical chemistry · 2018
    Review
  15. Mitochondria and Reactive Oxygen Species in Aging and Age-Related Diseases.International review of cell and molecular biology · 2018
    Review
  16. NScientific reports · 2017
    Article
  17. Article
  18. Review
  19. hucMSC Exosome-Derived GPX1 Is Required for the Recovery of Hepatic Oxidant Injury.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yang YuFrom the ‡Environmental Toxicology Graduate Program and.
Candace R Guerrero§Department of Chemistry, University of California, Riverside, California 92521;
Shuo LiuFrom the ‡Environmental Toxicology Graduate Program and.
Nicholas J Amato§Department of Chemistry, University of California, Riverside, California 92521;
Yogeshwar Sharma¶Department of Medicine and.
Sanjeev Gupta¶Department of Medicine and ‖Department of Pathology, **Marion Bessin Liver Research Center, Diabetes Center, Cancer Center, and Ruth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Research, Albert Einstein College of Medicine, Bronx, New York 10461.
Yinsheng WangFrom the ‡Environmental Toxicology Graduate Program and §Department of Chemistry, University of California, Riverside, California 92521; Yinsheng.Wang@ucr.edu.
University of California, Riverside · USAlbert Einstein College of Medicine · US

Funding

Special Animal CoreP30DK041296 · NIDDK · YESHIVA UNIVERSITY · PI ROY-CHOWDHURY, JAYANTA · 1989 to 2018
$22.9M
Research Training in Environmental ToxicologyT32ES018827 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Yinsheng Wang · 2010 to 2026
$5.3M
Transplantation of Endothelial CellsR01DK071111 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GUPTA, SANJEEV · 2006 to 2016
$3.6M
Oxidative DNA Damage and CpG MutagenesisR01CA101864 · NCI · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2004 to 2015
$2.8M
Cell transplantation and inflammationR01DK088561 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GUPTA, SANJEEV · 2011 to 2014
$1.7M
NCI NIH HHS R01 CA 101864NCI NIH HHS R01 CA101864NIDDK NIH HHS P30 DK041296NIDDK NIH HHS P30 DK41296NIDDK NIH HHS R01 DK 071111NIDDK NIH HHS R01 DK071111NIDDK NIH HHS R01 DK088561NIEHS NIH HHS T32 ES018827
6 · The paper itself

Abstract

Defective copper excretion from hepatocytes in Wilson's disease causes accumulation of copper ions with increased generation of reactive oxygen species via the Fenton-type reaction. Here we developed a nanoflow liquid chromatography-nanoelectrospray ionization-tandem mass spectrometry coupled with the isotope-dilution method for the simultaneous quantification of oxidatively induced DNA modifications. This method enabled measurement, in microgram quantities of DNA, of four oxidative stress-induced lesions, including direct ROS-induced purine cyclonucleosides (cPus) and two exocyclic adducts induced by byproducts of lipid peroxidation, i.e. 1,N(6)-etheno-2'-deoxyadenosine (εdA) and 1,N(2)-etheno-2'-deoxyguanosine (εdG). Analysis of liver tissues of Long-Evans Cinnamon rats, which constitute an animal model of human Wilson's disease, and their healthy counterparts [i.e. Long-Evans Agouti rats] showed significantly higher levels of all four DNA lesions in Long-Evans Cinnamon than Long-Evans Agouti rats. Moreover, cPus were present at much higher levels than εdA and εdG lesions. In contrast, the level of 5-hydroxymethyl-2'-deoxycytidine (5-HmdC), an oxidation product of 5-methyl-2'-deoxycytidine (5-mdC), was markedly lower in the liver tissues of Long-Evans Cinnamon than Long-Evans Agouti rats, though no differences were observed for the levels of 5-mdC. In vitro biochemical assay showed that Cu(2+) ions could directly inhibit the activity of Tet enzymes. Together, these results suggest that aberrant copper accumulation may perturb genomic stability by elevating oxidatively induced DNA lesions, and by altering epigenetic pathways of gene regulation.

Indexed as

AnimalsChromatography, LiquidCopperDeoxycytidineDisease Models, AnimalDNAEpigenesis, GeneticGenomic InstabilityHepatolenticular DegenerationHumansLipid PeroxidationLiverNanotechnologyOxidation-ReductionRatsRats, Long-Evans5-hydroxymethyl-2'-deoxycytidineCopperDeoxycytidineDNAReactive Oxygen Species

Identifiers

PMID26362317
PMCPMC4813702
OpenAlexW2235117179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.