Evidence map›Paper›PMID 26359497›Full record

ArticleThe Journal of biological chemistry2015

Structural insights into cargo recognition by the yeast PTS1 receptor.

Stefanie Hagen, Friedel Drepper, Sven Fischer, Krisztian Fodor, Daniel Passon, Harald W Platta, Michael Zenn, Wolfgang Schliebs, Wolfgang Girzalsky, Matthias Wilmanns and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Building peroxisomes: perspectives on plant peroxins.Biochemical Society transactions · 2026
    Review
  2. Article
  3. PEX1 is essential for glycosome biogenesis and trypanosomatid parasite survival.Frontiers in cellular and infection microbiology · 2024
    Article
  4. Molecular Response ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Article
  7. Uncovering targeting priority to yeast peroxisomes using an in-cell competition assay.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Peroxisome protein import: a complex journey.Biochemical Society transactions · 2016
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Stefanie HagenFrom the Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, System Biochemistry, Ruhr-University Bochum, D-44780 Bochum, Germany.
Friedel Drepperthe Department of Biochemistry and Functional Proteomics, Faculty of Biology and BIOSS Centre for Biological Signaling Studies, University of Freiburg, D-79104 Freiburg, Germany.
Sven Fischerthe Department of Biochemistry and Functional Proteomics, Faculty of Biology and BIOSS Centre for Biological Signaling Studies, University of Freiburg, D-79104 Freiburg, Germany.
Krisztian Fodorthe Department of Biochemistry, Eötvös Loránd University, H-1117 Budapest, Hungary.
Daniel Passonthe European Molecular Biology Laboratory at Hamburg, D-22607 Hamburg, Germany.
Harald W Plattathe Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, Biochemistry of Intracellular Transport Mechanism, Ruhr-University Bochum, D-44781 Bochum, Germany, and.
Michael Zennthe Biaffin GmbH and Co., KG, D-34132 Kassel, Germany.
Wolfgang SchliebsFrom the Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, System Biochemistry, Ruhr-University Bochum, D-44780 Bochum, Germany.
Wolfgang GirzalskyFrom the Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, System Biochemistry, Ruhr-University Bochum, D-44780 Bochum, Germany.
Matthias Wilmannsthe European Molecular Biology Laboratory at Hamburg, D-22607 Hamburg, Germany.
Bettina Warscheidthe Department of Biochemistry and Functional Proteomics, Faculty of Biology and BIOSS Centre for Biological Signaling Studies, University of Freiburg, D-79104 Freiburg, Germany.
Ralf ErdmannFrom the Institute of Biochemistry and Pathobiochemistry, Faculty of Medicine, System Biochemistry, Ruhr-University Bochum, D-44780 Bochum, Germany, ralf.erdmann@rub.de.
Ruhr University Bochum · DEUniversity of Freiburg · DEEuropean Molecular Biology Laboratory · DEBiaffin (Germany) · DEEötvös Loránd University · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The peroxisomal matrix protein import is facilitated by cycling import receptors that shuttle between the cytosol and the peroxisomal membrane. The import receptor Pex5p mediates the import of proteins harboring a peroxisomal targeting signal of type I (PTS1). Purified recombinant Pex5p forms a dimeric complex with the PTS1-protein Pcs60p in vitro with a KD of 0.19 μm. To analyze the structural basis for receptor-cargo recognition, the PTS1 and adjacent amino acids of Pcs60p were systematically scanned for Pex5p binding by an in vitro site-directed photo-cross-linking approach. The cross-linked binding regions of the receptor were subsequently identified by high resolution mass spectrometry. Most cross-links were found with TPR6, TPR7, as well as the 7C-loop of Pex5p. Surface plasmon resonance analysis revealed a bivalent interaction mode for Pex5p and Pcs60p. Interestingly, Pcs60p lacking its C-terminal tripeptide sequence was efficiently cross-linked to the same regions of Pex5p. The KD value of the interaction of truncated Pcs60p and Pex5p was in the range of 7.7 μm. Isothermal titration calorimetry and surface plasmon resonance measurements revealed a monovalent binding mode for the interaction of Pex5p and Pcs60p lacking the PTS1. Our data indicate that Pcs60p contains a second contact site for its receptor Pex5p, beyond the C-terminal tripeptide. The physiological relevance of the ancillary binding region was supported by in vivo import studies. The bivalent binding mode might be explained by a two-step concept as follows: first, cargo recognition and initial tethering by the PTS1-receptor Pex5p; second, lock-in of receptor and cargo.

Indexed as

Gene Expression Regulation, FungalAmino Acid SequenceBase SequenceBinding SitesKineticsLigasesMembrane ProteinsMembrane Transport ProteinsMolecular Sequence DataPeroxisomesPeroxisome-Targeting Signal 1 ReceptorPhosphorylationPlasmidsProtein BindingProtein MultimerizationProtein Structure, SecondaryLigasesMembrane ProteinsMembrane Transport ProteinsPCS60 protein, S cerevisiaePeroxisome-Targeting Signal 1 ReceptorPEX5 protein, S cerevisiaeRecombinant Fusion ProteinsSaccharomyces cerevisiae Proteinsmass spectrometry (MS)peroxisomeprotein cross-linkingprotein-protein interactionprotein targetingprotein translocationyeast

Identifiers

PMID26359497
PMCPMC4646318
OpenAlexW2219036549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.