Evidence map›Paper›PMID 26359233›Full record

ArticleGenome research2015

SORBS2 transcription is activated by telomere position effect-over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy.

Jérôme D Robin, Andrew T Ludlow, Kimberly Batten, Marie-Cécile Gaillard, Guido Stadler, Frédérique Magdinier, Woodring E Wright, Jerry W Shay

Abstract read
In one paragraph

Article in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

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  17. Review
  18. Regulation of Gene Expression by Telomere Position Effect.International journal of molecular sciences · 2021
    Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jérôme D RobinDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, Texas 75390, USA;
Andrew T LudlowDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, Texas 75390, USA;
Kimberly BattenDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, Texas 75390, USA;
Marie-Cécile GaillardAix Marseille Universite, INSERM, GMGF, Marseille 13385 Cedex 05, France;
Guido StadlerDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, Texas 75390, USA;
Frédérique MagdinierAix Marseille Universite, INSERM, GMGF, Marseille 13385 Cedex 05, France;
Woodring E WrightDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, Texas 75390, USA;
Jerry W ShayDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, Texas 75390, USA; Center for Excellence in Genomics Medicine Research, King Abdulaziz University, Jeddah 21589, Saudi Arabia.

Funding

Cell Biology Research Improvements and RenovationsC06RR030414 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI FITZ, JOHN GREGORY · 2010 to 2010
$15.0M
GENE EXPRESSION IN AGING AND DEVELOPMENTR01AG001228 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 1985 to 2018
$7.6M
Cancer Biology Training GrantT32CA124334 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 2007 to 2021
$5.3M
GENE EXPRESSION IN AGING AND DEVELOPMENTR37AG001228 · NIA · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI WRIGHT, WOODRING ERIK · 1987 to 1996
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NCI NIH HHS T32 CA124334NCI NIH HHS T32CA124334NCRR NIH HHS C06 RR030414NCRR NIH HHS C06 RR30414NIA NIH HHS AG01228NIA NIH HHS R01 AG001228
6 · The paper itself

Abstract

DNA is organized into complex three-dimensional chromatin structures, but how this spatial organization regulates gene expression remains a central question. These DNA/chromatin looping structures can range in size from 10-20 kb (enhancers/repressors) to many megabases during intra- and inter-chromosomal interactions. Recently, the influence of telomere length on chromatin organization prior to senescence has revealed the existence of long-distance chromatin loops that dictate the expression of genes located up to 10 Mb from the telomeres (Telomere Position Effect-Over Long Distances [TPE-OLD]). Here, we demonstrate the existence of a telomere loop at the 4q35 locus involving the sorbin and SH3 domain-containing protein 2 gene, SORBS2, a skeletal muscle protein using a modification of the chromosome conformation capture method. The loop reveals a cis-acting mechanism modifying SORBS2 transcription. The expression of this gene is altered by TPE-OLD in myoblasts from patients affected with the age-associated genetic disease, facioscapulohumeral muscular dystrophy (FSHD1A, MIM 158900). SORBS2 is expressed in FSHD myoblasts with short telomeres, while not detectable in FSHD myoblasts with long telomeres or in healthy myoblasts regardless of telomere length. This indicates that TPE-OLD may modify the regulation of the 4q35 locus in a pathogenic context. Upon differentiation, both FSHD and healthy myotubes express SORBS2, suggesting that SORBS2 is normally up-regulated by maturation/differentiation of skeletal muscle and is misregulated by TPE-OLD-dependent variegation in FSHD myoblasts. These findings provide additional insights for the complexity and age-related symptoms of FSHD.

Indexed as

Telomere ShorteningTranscriptional ActivationAdaptor Proteins, Signal TransducingBiopsyChromosome DeletionChromosomes, Human, Pair 4DNA MethylationEpistasis, GeneticGene Expression RegulationGenetic LociHomeodomain ProteinsHumansIn Situ Hybridization, FluorescenceMuscle CellsMuscle, SkeletalMuscular Dystrophy, FacioscapulohumeralAdaptor Proteins, Signal TransducingHomeodomain ProteinsMyoD1 myogenic differentiation proteinMyoD ProteinRNA-Binding ProteinsSORBS2 protein, human

Identifiers

PMID26359233
PMCPMC4665000

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.