Evidence map›Paper›PMID 26358132›Full record

ArticleBriefings in bioinformatics2016

Collaborative science in the next-generation sequencing era: a viewpoint on how to combine exome sequencing data across sites to identify novel disease susceptibility genes.

Steven N Hart, Kara N Maxwell, Tinu Thomas, Vignesh Ravichandran, Bradley Wubberhorst, Robert J Klein, Kasmintan Schrader, Csilla Szabo, Jeffrey N Weitzel, Susan L Neuhausen and 4 more

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Toward automation of germline variant curation in clinical cancer genetics.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Steven N Hart
Kara N Maxwell
Tinu Thomas
Vignesh Ravichandran
Bradley Wubberhorst
Robert J Klein
Kasmintan Schrader
Csilla Szabo
Jeffrey N Weitzel
Susan L Neuhausen
Katherine Nathanson
Kenneth Offit
Fergus J Couch
Joseph Vijai

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
Identifying and validating novel susceptibility genes for breast cancerR01CA176785 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH, NATHANSON, KATHERINE L. · 2014 to 2018
$3.4M
Clinical Cancer Genetics Community Network: A Sustainable Research PartnershipRC4CA153828 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI WEITZEL, JEFFREY N · 2010 to 2010
$1.0M
Genetic Variation Affecting Epigenome and Breast Cancer SusceptibilityR21CA139396 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI KIRCHHOFF, TOMAS · 2010 to 2011
$439k
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA176785NCI NIH HHS R21 CA139396NCI NIH HHS RC4 CA153828NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

The purpose of this article is to inform readers about technical challenges that we encountered when assembling exome sequencing data from the 'Simplifying Complex Exomes' (SIMPLEXO) consortium-whose mandate is the discovery of novel genes predisposing to breast and ovarian cancers. Our motivation is to share these obstacles-and our solutions to them-as a means of communicating important technical details that should be discussed early in projects involving massively parallel sequencing.

Indexed as

ExomeHigh-Throughput Nucleotide SequencingGenetic Predisposition to DiseaseHumansexomegenomics

Identifiers

PMID26358132
PMCPMC4945829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.