ArticleJournal of experimental botany2015
Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus.
Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
26 citing papers in PubMed, 53 citations in OpenAlex.
- Comparative transcriptome analysis reveals molecular mechanisms of resistance in Chinese cabbage toFrontiers in microbiology · 2025Article
- The evolutionary trajectories of specialized metabolites towards antiviral defense system in plants.Molecular horticulture · 2024Review
- The Genomic Shock Hypothesis: Genetic and Epigenetic Alterations of Transposable Elements after Interspecific Hybridization in Plants.Epigenomes · 2023Review
- Comparative transcriptome analysis identifies candidate genes related to seed coat color in rapeseed.Frontiers in plant science · 2023Article
- The miR393-Target Module Regulates Plant Development and Responses to Biotic and Abiotic Stresses.International journal of molecular sciences · 2022Review
- Rapid and Synchronous Breeding of Cytoplasmic Male Sterile and Maintainer Line Through Mitochondrial DNA Rearrangement Using Doubled Haploid Inducer inFrontiers in plant science · 2022Article
- Genome-Wide Characterization of Glutathione Peroxidase (GPX) Gene Family in Rapeseed (Antioxidants (Basel, Switzerland) · 2021Article
- Genome-Wide Analysis and Expression Profile of Superoxide Dismutase (SOD) Gene Family in Rapeseed (Antioxidants (Basel, Switzerland) · 2021Article
- Genome-wide analysis and expression patterns of lipid phospholipid phospholipase gene family in Brassica napus L.BMC genomics · 2021Article
- Catalase (CAT) Gene Family in Rapeseed (International journal of molecular sciences · 2021Article
- Genomic imprinted genes in reciprocal hybrid endosperm of Brassica napus.BMC plant biology · 2021Article
- ComprehensiveFrontiers in genetics · 2021Article
- Advances in Research on the Mechanism of Heterosis in Plants.Frontiers in plant science · 2021Review
- A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum).BMC genomics · 2019Article
- Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa.BMC genomics · 2019Article
- Analysis of small RNA changes in differentPeerJ · 2019Article
- Translating Flowering Time From Arabidopsis thaliana to Brassicaceae and Asteraceae Crop Species.Plants (Basel, Switzerland) · 2018Review
- The initial deficiency of protein processing and flavonoids biosynthesis were the main mechanisms for the male sterility induced by SX-1 in Brassica napus.BMC genomics · 2018Article
- Genome-wide identification of oil biosynthesis-related long non-coding RNAs in allopolyploid Brassica napus.BMC genomics · 2018Article
- Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species.Scientific reports · 2018Article
Corrections and comments
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Authors and funding
18 authors at 6 institutions in 5 countries.
Funding
Abstract
The recently published genome of Brassica napus offers for the first time the opportunity to gain insights into the genomic organization and the evolution of miRNAs in oilseed rape. In this study, 12 small RNA libraries from two B. napus cultivars (Tapidor and Ningyou7) and their four double-haploid lines were sequenced, employing the newly sequenced B. napus genome, together with genomes of its progenitors Brassica rapa and Brassica oleracea. A total of 645 miRNAs including 280 conserved and 365 novel miRNAs were identified. Comparative analysis revealed a high level of genomic conservation of MIRNAs (75.9%) between the subgenomes of B. napus and its two progenitors' genomes, and MIRNA lost/gain events (133) occurred in B. napus after its speciation. Furthermore, significant partitioning of miRNA expressions between the two subgenomes in B. napus was detected. The data of degradome sequencing, miRNA-mediated cleavage, and expression analyses support specific interactions between miRNAs and their targets in the modulation of diverse physiological processes in roots and leaves, as well as in biosynthesis of, for example, glucosinolates and lipids in oilseed rape. These data provide a first genome-wide view on the origin, evolution, and genomic organization of B. napus MIRNAs.
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