Evidence map›Paper›PMID 26356327›Full record

ArticleThe Journal of pathology2016

Dual loss of the SWI/SNF complex ATPases SMARCA4/BRG1 and SMARCA2/BRM is highly sensitive and specific for small cell carcinoma of the ovary, hypercalcaemic type.

Anthony N Karnezis, Yemin Wang, Pilar Ramos, William Pd Hendricks, Esther Oliva, Emanuela D'Angelo, Jaime Prat, Marisa R Nucci, Torsten O Nielsen, Christine Chow and 11 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of pathology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 1 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 1 synthesis or guideline pooled it, 220 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. SWI/SNF Complex-Deficient Undifferentiated Carcinoma of the Pancreas: Clinicopathologic and Genomic Analysis.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2024
    Trial
  4. Review
  5. Review
  6. Article
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  19. Case Report: FAPFrontiers in immunology · 2025
    Article
  20. Review

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 13 institutions in 5 countries.

Anthony N KarnezisDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Yemin WangDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Pilar RamosDivision of Integrated Cancer Genomics, Translational Genomics Research Institute (TGen), Phoenix, AZ, USA.
William Pd HendricksDivision of Integrated Cancer Genomics, Translational Genomics Research Institute (TGen), Phoenix, AZ, USA.
Esther OlivaDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Emanuela D'AngeloDepartment of Pathology, Hospital de la Santa Creu i Sant Pau, Autonomous University of Barcelona, Barcelona, Spain.
Jaime PratDepartment of Pathology, Hospital de la Santa Creu i Sant Pau, Autonomous University of Barcelona, Barcelona, Spain.
Marisa R NucciDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Torsten O NielsenDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Christine ChowGenetic Pathology Evaluation Centre, Vancouver General Hospital, University of British Columbia, Vancouver, BC, Canada.
Samuel LeungGenetic Pathology Evaluation Centre, Vancouver General Hospital, University of British Columbia, Vancouver, BC, Canada.
Friedrich KommossSynlab MVZ Pathologie, Mannheim, Germany.
Stefan KommossDepartment of Obstetrics and Gynecology, University Hospital of Tuebingen, Tuebingen, Germany.
Annacarolina SilvaThe James Homer Wright Pathology Laboratories, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Brigitte M RonnettDepartment of Pathology, The Johns Hopkins Hospital, Baltimore, MD, USA.
Joseph T RabbanDepartment of Anatomic Pathology, University of California San Francisco, San Francisco, CA, USA.
David D BowtellPeter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.
Bernard E WeissmanDepartment of Pathology and Laboratory Medicine, Lineberger Cancer Center, University of North Carolina, Chapel Hill, NC, USA.
Jeffrey M TrentDivision of Integrated Cancer Genomics, Translational Genomics Research Institute (TGen), Phoenix, AZ, USA.
C Blake GilksDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
David G HuntsmanDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
University of British Columbia · CATranslational Genomics Research Institute · USHospital de Sant Pau · ESBrigham and Women's Hospital · USHarvard University · USJohns Hopkins Hospital · USMassachusetts General Hospital · USPeter MacCallum Cancer Centre · AUSynlab (Germany) · DEUniversity of California, San Francisco · USUniversity of North Carolina at Chapel Hill · USUniversity of Tübingen · DEVancouver General Hospital · CA

Funding

The Tumor Suppressor Role of SMARCA4 in SCCOHTR01CA195670 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HUNTSMAN, DAVID, TRENT, JEFFREY M. · 2015 to 2019
$3.7M
Canadian Institutes of Health ResearchNCI NIH HHS R01 CA195670NCI NIH HHS R01 CA195670-01
6 · The paper itself

Abstract

Small cell carcinoma of the ovary, hypercalcaemic type (SCCOHT) is a lethal and sometimes familial ovarian tumour of young women and children. We and others recently discovered that over 90% of SCCOHTs harbour inactivating mutations in the chromatin remodelling gene SMARCA4 with concomitant loss of its encoded protein SMARCA4 (BRG1), one of two mutually exclusive ATPases of the SWI/SNF chromatin remodelling complex. To determine the specificity of SMARCA4 loss for SCCOHT, we examined the expression of SMARCA4 by immunohistochemistry in more than 3000 primary gynaecological tumours. Among ovarian tumours, it was only absent in clear cell carcinoma (15 of 360, 4%). In the uterus, it was absent in endometrial stromal sarcomas (4 of 52, 8%) and high-grade endometrioid carcinomas (2 of 338, 1%). Recent studies have shown that SMARCA2 (BRM), the other mutually exclusive ATPase of the SWI/SNF complex, is necessary for survival of tumour cells lacking SMARCA4. Therefore, we examined SMARCA2 expression and discovered that all SMARCA4-negative SCCOHTs also lacked SMARCA2 protein by IHC, including the SCCOHT cell lines BIN67 and SCCOHT1. Among ovarian tumours, the SMARCA4/SMARCA2 dual loss phenotype appears completely specific for SCCOHT. SMARCA2 loss was not due to mutation but rather from an absence of mRNA expression, which was restored by treatment with the histone deacetylase inhibitor trichostatin A. Re-expression of SMARCA4 or SMARCA2 inhibited the growth of BIN67 and SCCOHT1 cell lines. Our results indicate that SMARCA4 loss, either alone or with SMARCA2, is highly sensitive and specific for SCCOHT and that restoration of either SWI/SNF ATPase can inhibit the growth of SCCOHT cell lines.

Indexed as

Adenosine TriphosphatasesBiomarkers, TumorCarcinoma, Small CellCell Line, TumorCell ProliferationCell Transformation, NeoplasticChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA HelicasesFemaleGene SilencingHumansHypercalcemiaImmunohistochemistryMutationNuclear ProteinsAdenosine TriphosphatasesBiomarkers, TumorChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA HelicasesNuclear ProteinsSMARCA2 protein, humanSMARCA4 protein, humanSMARCB1 ProteinSMARCB1 protein, humanTranscription Factorsepigenetic silencingHDAC inhibitorhypercalcaemic typerhabdoid tumoursmall cell carcinomaSMARCA2/BRMSMARCA4/BRG1SMARCB1/INI1SWI/SNFtrichostatin A

Identifiers

PMID26356327
PMCPMC4832362
OpenAlexW1941960325

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.