Evidence map›Paper›PMID 26356302›Full record

ArticleNature communications2015

Identification of a plastidial phenylalanine exporter that influences flux distribution through the phenylalanine biosynthetic network.

Joshua R Widhalm, Michael Gutensohn, Heejin Yoo, Funmilayo Adebesin, Yichun Qian, Longyun Guo, Rohit Jaini, Joseph H Lynch, Rachel M McCoy, Jacob T Shreve and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 97 citations in OpenAlex.

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  13. The Main Functions of Plastids.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Joshua R WidhalmDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Michael GutensohnDepartment of Horticulture and Landscape Architecture, Purdue University, 625 Agriculture Mall Dr, West Lafayette, Indiana 47907-2010, USA.
Heejin YooDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Funmilayo AdebesinDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Yichun QianDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Longyun GuoDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Rohit JainiSchool of Chemical Engineering, Purdue University, 480 Stadium Mall Dr, West Lafayette, Indiana 47907-2100, USA.
Joseph H LynchDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Rachel M McCoyDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Jacob T ShreveBioinformatics Core, Purdue University, 155 South Grant Street, West Lafayette, Indiana 47907, USA.
Jyothi ThimmapuramBioinformatics Core, Purdue University, 155 South Grant Street, West Lafayette, Indiana 47907, USA.
David RhodesDepartment of Horticulture and Landscape Architecture, Purdue University, 625 Agriculture Mall Dr, West Lafayette, Indiana 47907-2010, USA.
John A MorganDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Natalia DudarevaDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, Indiana 47907-2063, USA.
Purdue University West Lafayette · US

Funding

Short-Term Training Program In Biomedical SciencesT35HL110854 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI Brittney-Shea Herbert, Catherine Rufatto Sears · 2012 to 2026
$3.4M
6 · The paper itself

Abstract

In addition to proteins, L-phenylalanine is a versatile precursor for thousands of plant metabolites. Production of phenylalanine-derived compounds is a complex multi-compartmental process using phenylalanine synthesized predominantly in plastids as precursor. The transporter(s) exporting phenylalanine from plastids, however, remains unknown. Here, a gene encoding a Petunia hybrida plastidial cationic amino-acid transporter (PhpCAT) functioning in plastidial phenylalanine export is identified based on homology to an Escherichia coli phenylalanine transporter and co-expression with phenylalanine metabolic genes. Radiolabel transport assays show that PhpCAT exports all three aromatic amino acids. PhpCAT downregulation and overexpression result in decreased and increased levels, respectively, of phenylalanine-derived volatiles, as well as phenylalanine, tyrosine and their biosynthetic intermediates. Metabolic flux analysis reveals that flux through the plastidial phenylalanine biosynthetic pathway is reduced in PhpCAT RNAi lines, suggesting that the rate of phenylalanine export from plastids contributes to regulating flux through the aromatic amino-acid network.

Indexed as

Amino Acid Transport Systems, BasicBiosynthetic PathwaysEscherichia coliMetabolic Flux AnalysisPetuniaPhenylalaninePlant ProteinsPlants, Genetically ModifiedPlastidsReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA InterferenceSequence Analysis, RNATyrosineVolatile Organic CompoundsAmino Acid Transport Systems, BasicPhenylalaninePlant ProteinsTyrosineVolatile Organic Compounds

Identifiers

PMID26356302
PMCPMC4647861
OpenAlexW2265432051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.