ArticleScientific reports2015
Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.
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91 citing papers in PubMed.
- Genome-wide prediction of cloned disease resistance homologues across the Oryza genus.The plant genome · 2026Article
- Structural characteristics of the Phoebe hui chloroplast genome and phylogenetic analyses of Phoebe plants.BMC genomics · 2026Article
- Unraveling the Chloroplast Genome of Stellaria media: Comprehensive Analysis, Taxonomic Implications, and Evolutionary Perspectives.Biochemical genetics · 2026Article
- Pan-genome of wild and cultivated rice uncovers genetic diversity, lost and selected sequences during rice domestication.Rice (New York, N.Y.) · 2026Article
- Independent Origin of Phenol Non-responsive Phenotype Caused By Phr1 Variation During Domestication of Asian and African Rice.Rice (New York, N.Y.) · 2026Article
- A robust 1K-core marker set for wild germplasm management and targeted pre-breeding of rice: development and applications.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Complete Chloroplast Genome Characterization, and Phylogenetic Analyses of the Rare and Endangered PlantBiology · 2025Article
- Characterization of the FourGenes · 2025Article
- The origin and evolution of cultivated rice and genomic signatures of heterosis for yield traits in super-hybrid rice.BMC biology · 2025Article
- Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species.Frontiers in plant science · 2025Article
- African Cultivated, Wild and Weedy Rice (Biology · 2024Review
- Comparative chloroplast genome analyses of cultivated and wild Capsicum species shed light on evolution and phylogeny.BMC plant biology · 2024Article
- Phylogenomics and plastomics offer new evolutionary perspectives on Kalanchoideae (Crassulaceae).Annals of botany · 2024Article
- Molecular Characterization and Phylogenetic Analysis of Centipedegrass [Current issues in molecular biology · 2024Article
- Genetic characteristics of the diploid offsprings in potato Cooperation 88 induced by diploid donor IVP101.Frontiers in plant science · 2024Article
- Analysis of phylogenetic relationships inFrontiers in plant science · 2024Article
- Genomic exploration of Sesuvium sesuvioides: comparative study and phylogenetic analysis within the order Caryophyllales from Cholistan desert, Pakistan.BMC plant biology · 2023Article
- Comparative analysis of dioecious Amaranthus plastomes and phylogenomic implications within Amaranthaceae s.s.BMC ecology and evolution · 2023Article
- The First Complete Chloroplast Genome ofGenes · 2023Article
- The International Oryza Map Alignment Project (IOMAP): the Americas-past achievements and future directions.Journal of experimental botany · 2023Article
31 more citing papers are in PubMed but not listed here.
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5 authors.
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Abstract
Rice is the most important crop in the world, acting as the staple food for over half of the world's population. The evolutionary relationships of cultivated rice and its wild relatives have remained contentious and inconclusive. Here we report on the use of whole chloroplast sequences to elucidate the evolutionary and phylogenetic relationships in the AA genome Oryza species, representing the primary gene pool of rice. This is the first study that has produced a well resolved and strongly supported phylogeny of the AA genome species. The pan tropical distribution of these rice relatives was found to be explained by long distance dispersal within the last million years. The analysis resulted in a clustering pattern that showed strong geographical differentiation. The species were defined in two primary clades with a South American/African clade with two species, O glumaepatula and O longistaminata, distinguished from all other species. The largest clade was comprised of an Australian clade including newly identified taxa and the African and Asian clades. This refined knowledge of the relationships between cultivated rice and the related wild species provides a strong foundation for more targeted use of wild genetic resources in rice improvement and efforts to ensure their conservation.
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