ArticleG3 (Bethesda, Md.)2015
Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species.
Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
13 citing papers in PubMed, 25 citations in OpenAlex.
- Integrated high-density genetic maps in multi-parent FBMC plant biology · 2026Article
- High-quality chromosome-scale genomes facilitate effective identification of large structural variations in hot and sweet peppers.Horticulture research · 2022Article
- Genomic regions and candidate genes linked with Phytophthora capsici root rot resistance in chile pepper (Capsicum annuum L.).BMC plant biology · 2021Article
- Fine mapping of restorer-of-fertility gene based on high-density genetic mapping and collinearity analysis in pepper (Capsicum annuum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection.The plant genome · 2019Article
- Construction of a high density genetic map of an interspecific cross of Capsicum chinense and Capsicum annuum and QTL analysis of floral traits.Scientific reports · 2019Article
- Construction of a high-density genetic map and identification of QTLs for cucumber mosaic virus resistance in pepper (Breeding science · 2018Article
- Reference quality assembly of the 3.5-Gb genome ofHorticulture research · 2018Article
- Building Ultra-High-Density Linkage Maps Based on Efficient Filtering of Trustable Markers.Genetics · 2017Article
- Development of a SNP array and its application to genetic mapping and diversity assessment in pepper (Capsicum spp.).Scientific reports · 2016Article
- New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL.Frontiers in plant science · 2016Article
- A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding.Horticulture research · 2016Article
Corrections and comments
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Our ability to assemble complex genomes and construct ultradense genetic maps now allows the determination of recombination rates, translocations, and the extent of genomic collinearity between populations, species, and genera. We developed two ultradense genetic linkage maps for pepper from single-position polymorphisms (SPPs) identified de novo with a 30,173 unigene pepper genotyping array. The Capsicum frutescens × C. annuum interspecific and the C. annuum intraspecific genetic maps were constructed comprising 16,167 and 3,878 unigene markers in 2108 and 783 genetic bins, respectively. Accuracies of marker groupings and orders are validated by the high degree of collinearity between the two maps. Marker density was sufficient to locate the chromosomal breakpoint resulting in the P1/P8 translocation between C. frutescens and C. annuum to a single bin. The two maps aligned to the pepper genome showed varying marker density along the chromosomes. There were extensive chromosomal regions with suppressed recombination and reduced intraspecific marker density. These regions corresponded to the pronounced nonrecombining pericentromeric regions in tomato, a related Solanaceous species. Similar to tomato, the extent of reduced recombination appears to be more pronounced in pepper than in other plant species. Alignment of maps with the tomato and potato genomes shows the presence of previously known translocations and a translocation event that was not observed in previous genetic maps of pepper.
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