Evidence map›Paper›PMID 26355011›Full record

ArticlePlant & cell physiology2015

The Greater Phenotypic Homeostasis of the Allopolyploid Coffea arabica Improved the Transcriptional Homeostasis Over that of Both Diploid Parents.

Benoît Bertrand, Amélie Bardil, Hélène Baraille, Stéphane Dussert, Sylvie Doulbeau, Emeric Dubois, Dany Severac, Alexis Dereeper, Hervé Etienne

Open access · bronzeAbstract read
In one paragraph

Article in Plant & cell physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  7. Genomic selection in tropical perennial crops and plantation trees: a review.Molecular breeding : new strategies in plant improvement · 2022
    Review
  8. Whole-Genome Sequence of Synthesized Allopolyploids inAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
    Article
  9. Article
  10. Article
  11. Competition of Parental Genomes in Plant Hybrids.Frontiers in plant science · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Benoît BertrandCIRAD, UMR IPME, 911 Avenue Agropolis, BP 64501, 34394 Montpellier, France benoit.bertrand@cirad.fr.
Amélie BardilUniversity of Neuchâtel, Institute of Biology, Laboratory of Evolutionary Botany, Emile Argand 11, CP 158, 2000 Neuchâtel, Switzerland.
Hélène BarailleUniversité de Reims, Unité de Recherche Vignes et Vins de Champagne, Laboratoire de stress, défenses et reproduction des plantes, Campus Moulin de la Housse, 51687 Reims Cedex 2, France.
Stéphane DussertIRD, UMR DIADE, 911 Avenue Agropolis, BP 64501, 34394 Montpellier, France.
Sylvie DoulbeauIRD, UMR DIADE, 911 Avenue Agropolis, BP 64501, 34394 Montpellier, France.
Emeric DuboisCNRS, Montpellier GenomiX, c/o Institut de Génomique Fonctionnelle, 141 rue de la Cardonille, Montpellier Cedex 34, France.
Dany SeveracCNRS, Montpellier GenomiX, c/o Institut de Génomique Fonctionnelle, 141 rue de la Cardonille, Montpellier Cedex 34, France.
Alexis DereeperIRD, UMR IPME, 911 Avenue Agropolis, BP 64501, 34394 Montpellier, France.
Hervé EtienneCIRAD, UMR IPME, 911 Avenue Agropolis, BP 64501, 34394 Montpellier, France.
Agropolis International · FRInstitut de Génomique Fonctionnelle · FRInstitut de Recherche pour le Développement · FRLaboratoire des Interactions Plantes Micro-Organismes · FRUniversité de Reims Champagne-Ardenne · FRUniversity of Neuchâtel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyploidy impacts the diversity of plant species, giving rise to novel phenotypes and leading to ecological diversification. In order to observe adaptive and evolutionary capacities of polyploids, we compared the growth, primary metabolism and transcriptomic expression level in the leaves of the newly formed allotetraploid Coffea arabica species compared with its two diploid parental species (Coffea eugenioides and Coffea canephora), exposed to four thermal regimes (TRs; 18-14, 23-19, 28-24 and 33-29°C). The growth rate of the allopolyploid C. arabica was similar to that of C. canephora under the hottest TR and that of C. eugenioides under the coldest TR. For metabolite contents measured at the hottest TR, the allopolyploid showed similar behavior to C. canephora, the parent which tolerates higher growth temperatures in the natural environment. However, at the coldest TR, the allopolyploid displayed higher sucrose, raffinose and ABA contents than those of its two parents and similar linolenic acid leaf composition and Chl content to those of C. eugenioides. At the gene expression level, few differences between the allopolyploid and its parents were observed for studied genes linked to photosynthesis, respiration and the circadian clock, whereas genes linked to redox activity showed a greater capacity of the allopolyploid for homeostasis. Finally, we found that the overall transcriptional response to TRs of the allopolyploid was more homeostatic compared with its parents. This better transcriptional homeostasis of the allopolyploid C. arabica afforded a greater phenotypic homeostasis when faced with environments that are unsuited to the diploid parental species.

Indexed as

CoffeaDiploidyGene Expression Regulation, PlantGenome, PlantCoffea arabicaHomeostasisNatural allopolyploidPrimary metabolismTemperatureTranscriptomic expression level

Identifiers

PMID26355011
PMCPMC4679393
OpenAlexW1888308441

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.