Evidence map›Paper›PMID 26354769›Full record

ArticleGenetics2015

Complementation of Yeast Genes with Human Genes as an Experimental Platform for Functional Testing of Human Genetic Variants.

Akil Hamza, Erik Tammpere, Megan Kofoed, Christelle Keong, Jennifer Chiang, Guri Giaever, Corey Nislow, Philip Hieter

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. The power of many: when genetics met yeasts and high-throughput.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  3. Article
  4. Humanization of theGenes · 2026
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. International journal of molecular sciences · 2022
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Akil HamzaMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Erik TammpereMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Megan KofoedMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Christelle KeongMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Jennifer ChiangDepartment of Pharmaceutical Sciences, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
Guri GiaeverDepartment of Pharmaceutical Sciences, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
Corey NislowDepartment of Pharmaceutical Sciences, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
Philip HieterMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4 hieter@msl.ubc.ca.
University of British Columbia · CA

Funding

Functional Determinants of Chromosome SegregationR01CA158162 · NCI · UNIVERSITY OF BRITISH COLUMBIA · PI HIETER, PHILIP A. · 2012 to 2016
$1.1M
Canadian Institutes of Health Research MOP 38096NCI NIH HHS R01 CA158162NCI NIH HHS R01CA158162
6 · The paper itself

Abstract

While the pace of discovery of human genetic variants in tumors, patients, and diverse populations has rapidly accelerated, deciphering their functional consequence has become rate-limiting. Using cross-species complementation, model organisms like the budding yeast, Saccharomyces cerevisiae, can be utilized to fill this gap and serve as a platform for testing human genetic variants. To this end, we performed two parallel screens, a one-to-one complementation screen for essential yeast genes implicated in chromosome instability and a pool-to-pool screen that queried all possible essential yeast genes for rescue of lethality by all possible human homologs. Our work identified 65 human cDNAs that can replace the null allele of essential yeast genes, including the nonorthologous pair yRFT1/hSEC61A1. We chose four human cDNAs (hLIG1, hSSRP1, hPPP1CA, and hPPP1CC) for which their yeast gene counterparts function in chromosome stability and assayed in yeast 35 tumor-specific missense mutations for growth defects and sensitivity to DNA-damaging agents. This resulted in a set of human-yeast gene complementation pairs that allow human genetic variants to be readily characterized in yeast, and a prioritized list of somatic mutations that could contribute to chromosome instability in human tumors. These data establish the utility of this cross-species experimental approach.

Indexed as

Genes, FungalGenetic Complementation TestGenetics, MedicalGenetic VariationDNA, ComplementaryFeasibility StudiesGenes, EssentialHumansMutationNeoplasmsSaccharomyces cerevisiaeDNA, Complementarychromosome instabilityhuman genetic variantshuman–yeast cross-species complementationmodel organisms and human diseasetumor-specific missense mutations

Identifiers

PMID26354769
PMCPMC4649650
OpenAlexW2096352858

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.