Evidence map›Paper›PMID 26354439›Full record

ArticleThe Journal of biological chemistry2015

Producing glucose 6-phosphate from cellulosic biomass: structural insights into levoglucosan bioconversion.

John-Paul Bacik, Justin R Klesmith, Timothy A Whitehead, Laura R Jarboe, Clifford J Unkefer, Brian L Mark, Ryszard Michalczyk

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  5. Article
  6. Conversion of levoglucosan and cellobiosan byMetabolic engineering communications · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

John-Paul BacikFrom the Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, jbacik@lanl.gov.
Justin R Klesmiththe Departments of Biochemistry and Molecular Biology.ORCID http://orcid.org/0000-0003-2908-9355
Timothy A WhiteheadChemical Engineering and Materials Science, and Biosystems and Agricultural Engineering, Michigan State University, East Lansing, Michigan 48824.
Laura R Jarboethe Department of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50011, and.
Clifford J UnkeferFrom the Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545.
Brian L Markthe Department of Microbiology, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada.
Ryszard MichalczykFrom the Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545.
Los Alamos National Laboratory · USMichigan State University · USIowa State University · USUniversity of Manitoba · CA

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

The most abundant carbohydrate product of cellulosic biomass pyrolysis is the anhydrosugar levoglucosan (1,6-anhydro-β-d-glucopyranose), which can be converted to glucose 6-phosphate by levoglucosan kinase (LGK). In addition to the canonical kinase phosphotransfer reaction, the conversion requires cleavage of the 1,6-anhydro ring to allow ATP-dependent phosphorylation of the sugar O6 atom. Using x-ray crystallography, we show that LGK binds two magnesium ions in the active site that are additionally coordinated with the nucleotide and water molecules to result in ideal octahedral coordination. To further verify the metal binding sites, we co-crystallized LGK in the presence of manganese instead of magnesium and solved the structure de novo using the anomalous signal from four manganese atoms in the dimeric structure. The first metal is required for catalysis, whereas our work suggests that the second is either required or significantly promotes the catalytic rate. Although the enzyme binds its sugar substrate in a similar orientation to the structurally related 1,6-anhydro-N-acetylmuramic acid kinase (AnmK), it forms markedly fewer bonding interactions with the substrate. In this orientation, the sugar is in an optimal position to couple phosphorylation with ring cleavage. We also observed a second alternate binding orientation for levoglucosan, and in these structures, ADP was found to bind with lower affinity. These combined observations provide an explanation for the high Km of LGK for levoglucosan. Greater knowledge of the factors that contribute to the catalytic efficiency of LGK can be used to improve applications of this enzyme for levoglucosan-derived biofuel production.

Indexed as

BiocatalysisBiomassCelluloseCrystallography, X-RayEscherichia coliFungal ProteinsGene ExpressionGlucoseGlucose-6-PhosphateKineticsLipomycesMagnesiumManganeseModels, MolecularPhosphorylationPhosphotransferases1,6-anhydro-beta-glucopyranoseCelluloseFungal ProteinsGlucoseGlucose-6-PhosphateMagnesiumManganesePhosphotransferasesRecombinant Proteinsanhydrosugarbiofuelcarbohydrate processingcrystal structurehexokinaselevoglucosanstructural biology

Identifiers

PMID26354439
PMCPMC4646320
OpenAlexW1962724927

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.