Evidence map›Paper›PMID 26353760›Full record

ArticlePlant physiology2015

Phosphatidylinositol 3-Phosphate 5-Kinase, FAB1/PIKfyve Kinase Mediates Endosome Maturation to Establish Endosome-Cortical Microtubule Interaction in Arabidopsis.

Tomoko Hirano, Teun Munnik, Masa H Sato

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Regulation of PIN-FORMED Protein Degradation.International journal of molecular sciences · 2023
    Review
  8. Article
  9. Review
  10. Review
  11. Phospholipids in Salt Stress Response.Plants (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Article
  14. Large-Scale Phosphoproteomic Study ofInternational journal of molecular sciences · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. DownregulatingFrontiers in plant science · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Tomoko HiranoLaboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto 606-8522, Japan (T.H., M.H.S.); andSection Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (T.M.).ORCID http://orcid.org/0000-0002-3801-4219
Teun MunnikLaboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto 606-8522, Japan (T.H., M.H.S.); andSection Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (T.M.).ORCID http://orcid.org/0000-0002-4919-4913
Masa H SatoLaboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto 606-8522, Japan (T.H., M.H.S.); andSection Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (T.M.) mhsato@kpu.ac.jp.ORCID http://orcid.org/0000-0001-5794-4545
Kyoto Prefectural University · JPUniversity of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphatidylinositol 3,5-bisphosphate [PtdIns(3,5)P2] is an important lipid in membrane trafficking in animal and yeast systems; however, its role is still largely obscure in plants. Here, we demonstrate that the phosphatidylinositol 3-phosphate 5-kinase, formation of aploid and binucleate cells1 (FAB1)/FYVE finger-containing phosphoinositide kinase (PIKfyve), and its product, PtdIns(3,5)P2, are essential for the maturation process of endosomes to mediate cortical microtubule association of endosomes, thereby controlling proper PIN-FORMED protein trafficking in young cortical and stele cells of root. We found that FAB1 predominantly localizes on the Sorting Nexin1 (SNX1)-residing late endosomes, and a loss of FAB1 function causes the release of late endosomal proteins, Ara7, and SNX1 from the endosome membrane, indicating that FAB1, or its product PtdIns(3,5)P2, mediates the maturation process of the late endosomes. We also found that loss of FAB1 function causes the release of endosomes from cortical microtubules and disturbs proper cortical microtubule organization.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsEndosomesGene Expression Regulation, EnzymologicGenes, ReporterIndoleacetic AcidsIntracellular MembranesMicrotubulesModels, BiologicalMutationPhosphatesPhosphatidylinositol 3-KinasePhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)Protein TransportAra7 protein, ArabidopsisArabidopsis ProteinsFAB1A protein, ArabidopsisIndoleacetic AcidsPhosphatesphosphatidylinositol 3,5-diphosphatePhosphatidylinositol 3-KinasePhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)rab GTP-Binding ProteinsSNX1 protein, ArabidopsisSorting Nexins

Identifiers

PMID26353760
PMCPMC4634102
OpenAlexW2164019316

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.